Pairwise Alignments

Query, 504 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

Subject, 481 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  238 bits (607), Expect = 4e-67
 Identities = 155/466 (33%), Positives = 234/466 (50%), Gaps = 13/466 (2%)

Query: 11  LMVLAGCTQVGPDFEKPQAPWLDGWSTPMIEQAGRSAAAPDLRQ-WWAVFADSTLDALIA 69
           L+ L+ CT VGPDF++PQ P +  WS P   QA   A    L++ WW VF D  L AL  
Sbjct: 11  LISLSACT-VGPDFQRPQGPQVTQWSEPQGRQAASRAVNDPLQERWWDVFHDEQLSALTR 69

Query: 70  EADANNTNLRVAGLRIAEARAQLAIVQTGRYPQLQQLSAQSLYLKQDQSGT----PSARD 125
            A  +N +L++A  R+ ++RA   +    RYP +   +A   Y ++  SG     PS  +
Sbjct: 70  RALTDNLDLKLASSRLQQSRAVRQVTTAERYPNV---NANGDYQRKRNSGKGLSDPSGNN 126

Query: 126 --SVFWQSSVGFDIGWEIDFWGRFSRAIESADAVYFASQANYADAMLLLRAQVADTYFAL 183
             S F Q  +GF   WE+DFWGR  R  E+ADA    ++ +    +L + A+ A  Y  L
Sbjct: 127 GRSAFNQWDMGFSASWELDFWGRVKRETEAADATLQVAENDRRAVLLSVLAETAQNYIQL 186

Query: 184 RTAEARLAIAQENAKRQARSLEITERLFRHGENDELDWQQARTQYLATLATIPEFENQLN 243
           R  +   A+ ++N      SL++++     G   +LD  +A  Q  A  A +P+ + + +
Sbjct: 187 RGVQNTRAVTEQNLDVARHSLKLSQLRLADGVATDLDVAEAAAQVAAIEARLPDLQQRQD 246

Query: 244 ALRNILCSLLGRPPGPLPQLEAGHGQLPLPNRAVLQDVPASLLQRRPDIRAAEQAVAAQS 303
            L N L  L+G PP  L    +    +P   R V   +P+ L +RRPDIR AE  + A +
Sbjct: 247 QLINALSLLMGEPPQALHAQLSKDAAVPQTQRQVAIGLPSELAERRPDIRQAEARLHAAT 306

Query: 304 ALVGVAEADLYPQLSLLGSIGWTFLSANHLPD--TFDLAAGPSLIWNPFDYGRRKNTVRV 361
           A +GVA+ D YP+++L GS+G   +  +      +   A GP      F+ GR +  + +
Sbjct: 307 ASIGVAKGDFYPRITLSGSLGSQAMQLSDFGSWGSRAFAFGPQFSLPLFNGGRLQGMLNL 366

Query: 362 EDARLQQLIELYQQGVREAAREADDAASGLVRSLQSATIREQASQAAQRSLNLASSQYRE 421
            +A+ Q+    YQQ V  A  E DD  +    S        +A +  Q +L  A  QY E
Sbjct: 367 REAQQQEAALAYQQTVLRAWHEIDDQLTRYNASQLRRDSLAEAVRQNQIALRTAQQQYVE 426

Query: 422 GFADFQRVLDAQQLLLQQQDGYLVSRGNAVSSLVTLYKALGGGWDA 467
           G  DF  VL  Q  LL  Q+ ++ S      ++V LYKALGGGW++
Sbjct: 427 GVVDFVNVLTVQSALLATQEQWVDSSTGVSLAMVGLYKALGGGWES 472