Pairwise Alignments

Query, 328 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

Subject, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

 Score =  102 bits (253), Expect = 2e-26
 Identities = 86/307 (28%), Positives = 133/307 (43%), Gaps = 30/307 (9%)

Query: 19  MSPMSAKQLQPDPQQEALAWFSLLRQPGCDETQRQAFAAWCQVQENAHAYA--ELETFWQ 76
           MS MS    +   Q++A AW+  L           AF  W      AHA A  E+   W 
Sbjct: 1   MSAMSFSDSESLLQRQAEAWWVRLHSGRATRADADAFREWV-THSTAHAQAWREVMRTWS 59

Query: 77  QLQPAPARPRPR-------------------HVTVRRSHLGKGLALAFLLGLAAA--AYL 115
            L P  A    R                   H   RR+ LG  +A +   G+ A      
Sbjct: 60  ALDPLLAEEAARQASRAGTLSLRGLSAALGLHSPGRRAFLGGAVAASVTAGVMALDPPLG 119

Query: 116 YWPLMQRLASELHTDVGERRSIRLADGTTLNLDSASAMN-VDLRGRTRQLHLVQGQVHLE 174
            WP +  L ++  T  GE+R + LA G ++ +++ + +N +      R L LV G+   E
Sbjct: 120 LWPSVGDLTADYRTATGEQRQVALARGISVRMNTQTLINRIGADASPRGLVLVAGEA--E 177

Query: 175 VVLDGRA-MDVEVGNARIQVYGTRLQIARHAGRDELVV-FSGKAMVTQGGEQRMVSAGER 232
           +  +G +   VE G  R+     R  I RH G    V    G+  V+  GEQR + AG +
Sbjct: 178 IAANGASDFLVETGGGRLVARSARFNI-RHTGPQVCVTCLDGRLTVSVNGEQRALEAGRQ 236

Query: 233 VTFDDTRIDPVRKADLKTADSWRNGRLKATDMPLRQVLERLAGYQGQRLWMMDEQVAHRR 292
           VTFD   +  V +AD  +  +WR G L    MPL +V++ +  Y+  ++++ +E++    
Sbjct: 237 VTFDRAGLQEVVRADEASVSTWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTP 296

Query: 293 VSGDFNL 299
           V    NL
Sbjct: 297 VRMQLNL 303