Pairwise Alignments

Query, 328 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 89.7 bits (221), Expect = 1e-22
 Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)

Query: 100 GLALAFLLGLAAAAYLYWPLMQRLASELHTDVGERRSIRLADGTTLNLDSASAMNVDLRG 159
           G+A + +L +AA A   W     L ++ HT VGER+ I L DGT + L+SASA++V    
Sbjct: 171 GVAASVVLLVAAVAG--WQQAPILLADYHTAVGERQVITLTDGTRVTLNSASALSVAFSE 228

Query: 160 RTRQLHLVQGQVHLEVVLDGRAMDVEVGNARIQVYGTRLQIARHAGRDELVVFSGKAMVT 219
             R++ L  G+   E   D R   VE   AR+Q       + R      +V+  G+A V 
Sbjct: 229 HERRVVLDAGEALFETADDSRPFVVETAGARVQGNAATFSVQRDG---HVVLARGEAKV- 284

Query: 220 QGGEQRMVSAGERVTFDDTRIDPVRKADLKTADSWRNGRLKATDMPLRQVLERLAGYQGQ 279
             GE  +  A                AD  T  +W+ G+L     PL QVL  L  Y+  
Sbjct: 285 --GEHELAVA----------------ADAGTQMAWQRGKLIFNGKPLGQVLTELERYRHG 326

Query: 280 RLWMMDEQVAHRRVSGDFNLDQPGQSLQSLAAAQQLQLLGVLGHWLVV 327
           R+ + D ++A   VSG F+LD+P   L++L     L++  +   WL V
Sbjct: 327 RIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKVTYL--PWLAV 372