Pairwise Alignments

Query, 275 a.a., putative Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 265 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 75/269 (27%), Positives = 122/269 (45%), Gaps = 21/269 (7%)

Query: 9   LGAGLVLLATATQAFAGATLERVESRKEMVNVLMESYPPFSFLNDHNQLDGYDVDVAKAV 68
           LG G  L   A  A A +  + ++ + E+   ++  +PP+   +  NQ DGYD DVAK +
Sbjct: 14  LGLGAALTVFAPFACAQSVAD-IKKKGEITIGMLVDFPPYGTTDAKNQPDGYDADVAKLL 72

Query: 69  ADKLGVKLRLETPSWDVIAAGRWSGRYDICICSM--TPSKARAEVFDFPVEYYASPAVIV 126
           A   GVK  +   +         + + D+ + S+  TP +A+   F  P   YA+  +++
Sbjct: 73  AKDWGVKANIVPVTGPNRIPFLLTNKVDLLVASLAITPERAKQVQFSQP---YAAATIVL 129

Query: 127 VNASDERIHDAKDLEGRKVGSISASSYESYLNKNLVIEGKEDQKIDYPFDFVQAAPYDTE 186
             AS   I  A DL+G +VG   AS+ +  + K    EG E ++ D     +QA      
Sbjct: 130 YGASKTPIKAAADLKGLRVGVARASTQDVAVTK-AAPEGTEIRRFDDDASAMQAL----- 183

Query: 187 NVAFQDLGLGTGVRLDAIITNLVTAQPRLQQDKRFKLAGAPLYEEPNAVAIEKGDPEWDA 246
            ++ Q   +G  V + A I   V   P    + +F L      ++   +A+  G  E   
Sbjct: 184 -ISGQVDAIGCSVTVAAQIAKRV---PANTYENKFTLV-----QQSMGIAMRPGQEELTK 234

Query: 247 KVREVFAELKADGTLAKLSQKWIGADISK 275
            V E   +  A+G L KL QKW+  D+ K
Sbjct: 235 AVNEFVQKNTANGELNKLYQKWLQVDLPK 263