Pairwise Alignments

Query, 275 a.a., putative Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 283 a.a., ABC transporter, substrate binding protein (nopaline) from Agrobacterium fabrum C58

 Score = 79.3 bits (194), Expect = 8e-20
 Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 18/275 (6%)

Query: 15  LLATATQAFAGATLERVESRKEMVNVLMESYPPFSFLNDHNQLDGYDVDVAKAVADKLGV 74
           L A  T     A   + +  K +      SY P++F +   +L G+D+D+   +  ++ +
Sbjct: 9   LAAVVTGVLLAAGPTQAKDYKSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNI 68

Query: 75  KLRLETPSWDVIAAGRWSGRYDICICSMTPSKARAEVFDFPVEYYASPAVIVVNASDERI 134
           + +    +WD I     +GRYD  + +M    AR +V  F   Y  +P   +  A    +
Sbjct: 69  ECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLL 128

Query: 135 HDAKDLEGRKVGSISASSYESYLNKNLVIEG---------KEDQKIDYPFDFVQAAPYDT 185
                +E   + +I+            + EG           +  +      VQ + YDT
Sbjct: 129 KTQVAIENLPLDNITPEQKAELDKFTKIFEGVKFGVQAGTSHEAFMKQMMPSVQISTYDT 188

Query: 186 ENVAFQDLGLGTGVRLDAIITNLVTAQPRLQQ--DKRFKLAG----APLYEEPNAVAIEK 239
            +    DL  G   R+DA + ++   +P   +  +K  K+ G      L+ +   V I K
Sbjct: 189 IDNVVMDLKAG---RIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGGLFGKGVGVGIRK 245

Query: 240 GDPEWDAKVREVFAELKADGTLAKLSQKWIGADIS 274
            D +  A   +      ADGT+ KLSQ+W G D S
Sbjct: 246 EDADLKALFDKAIDAAIADGTVQKLSQQWFGYDAS 280