Pairwise Alignments

Query, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 395 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 93/400 (23%), Positives = 168/400 (42%), Gaps = 17/400 (4%)

Query: 7   LKAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLAIAEHPQLL 66
           L++  A   L    L A+ A A +P+    L  MSG F+ +     + +    AE  + L
Sbjct: 3   LRSRWAALVLSFAALSANAAVAAEPIRIGVLSDMSGVFSDFSGPGSVVAAQMAAEEFKDL 62

Query: 67  GHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGGV-FMT 125
           G P++    D    +       +     D          S+  LAV+  + + G V   +
Sbjct: 63  G-PIEILRADHLNKSDVGAAIARRWFDVDKVDIIADTIGSAVGLAVAAVVREKGKVAIFS 121

Query: 126 PVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDALLDN 185
             GA+++ G  C+   F W+   Y      ++  +      K WY I+ Q  +G +  + 
Sbjct: 122 GAGANDLFGVACSKGGFVWAFNAYSNAH--VIASALMDKGFKSWYLISQQSAWGRSTEET 179

Query: 186 ARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQASNALRQAVNFG 245
                        G     +  ++F+ +LT A A++ DV+ +L  G   +N ++QA  FG
Sbjct: 180 MLADLNSRDARVAGVVRIPILTEDFTSFLTTAQASRADVVAIL--GGVVANQVKQATEFG 237

Query: 246 IKDRMKVL---MVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAATRKAYGI 302
           ++   + L   M+W     Q    G +  +G+Y+ A  +  +D    +   A +++  G 
Sbjct: 238 VRQGGQQLTNPMIWE---HQVFGAGLENAQGMYVAAPTYWDLDEGTREWAKAFSKRT-GY 293

Query: 303 NPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELIRPGDHQVLKDY 362
            P+      Y G +  L+A+ K GS D + V+  ++    +  T    IRP D  V +DY
Sbjct: 294 APSMTHMGTYSGVRHFLQAVRKTGSRDPSVVTEEMRRTPVEDATTHGTIRP-DGLVSRDY 352

Query: 363 YLLRGKPQGQMRDEDDLAEV---ISSGRSFVEVDHTGCAL 399
           YL + K   + +   D+ +V   ISS  +   +  + C L
Sbjct: 353 YLFQVKSPAESKQPWDIYKVIKKISSADAMPPLKGSACPL 392