Pairwise Alignments

Query, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 402 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  104 bits (260), Expect = 4e-27
 Identities = 99/389 (25%), Positives = 174/389 (44%), Gaps = 12/389 (3%)

Query: 1   MQRRTLLKAGLALGALGSLPLGAHRAFAD-QPLTFYGLKSMSGAFASYG-KYADMGSRLA 58
           + RRT+L  G    AL     G+ RA A  QP+    L+ MSG F+  G     + +R+A
Sbjct: 2   VSRRTVLFGG----ALALTGAGSGRASAQVQPIKIGVLEDMSGVFSDLGGNGTTIAARMA 57

Query: 59  IAEHP-QLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIH 117
           + +   ++LG P++    D +     A+   ++    +G     G T S+ AL V K   
Sbjct: 58  VEDFGGKVLGRPIEIVSGDHQNKPDLALSIARKWYDIEGVGLITGLTNSAVALGVQKLAA 117

Query: 118 KAGGV-FMTPVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQY 176
               +  +     D +  +DC+ +   W+      +R T V M+ +    K WY I   Y
Sbjct: 118 DKNKINIVQNASTDVLIEQDCSPNAIIWNWTARTIVRLT-VEMAMKT-SGKTWYFIVSDY 175

Query: 177 VFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQASN 236
             G  + D A  +    G   +G S   + E +F+ +L  A A+K +VL ++ FG    N
Sbjct: 176 AGGRIMEDEATPLIKSAGGAVLGTSRPPVGEADFASHLLTAQASKAEVLGVVTFGQDFVN 235

Query: 237 ALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAAT 296
            LRQ V+FGI   M+ +  ++   D  + +G   ++G+ + A ++  ++ P  +      
Sbjct: 236 LLRQCVDFGIVRTMRPVAPFAFHSD-LKAVGPQGIQGMPVAAPFYWDLN-PETRAFSDRF 293

Query: 297 RKAYGINPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELIRPGDH 356
           RK  G  P+   A  Y       +++  A +   AAV AA++ M     + ++    GD 
Sbjct: 294 RKLTGRPPDVGHAGTYNALIHYFKSLKAANTDQTAAVLAAMRKMPINDMSTKDGFIRGDG 353

Query: 357 QVLKDYYLLRGKPQGQMRDEDDLAEVISS 385
            V++  Y   GK   + +D  DL + + +
Sbjct: 354 MVVRQIYRFVGKTPAESKDPWDLLKFVDT 382