Pairwise Alignments

Query, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 401 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 7/300 (2%)

Query: 76  DTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGGVFMTPVG-ADEITG 134
           D   N G AVR  +E I ++      G  LS++ LA++    +    ++      D+I  
Sbjct: 75  DDNANPGDAVRVAEELISREKIDVLAGAFLSNTGLALADFAKQKKFFYLAAEPLTDKIVW 134

Query: 135 KDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDALLDNARKVF--AE 192
            + N  T+R    TY  +   LVP + +L + KRW  + P Y +G + +   + +   A+
Sbjct: 135 SNGNKYTYRLRPSTYMQVA-MLVPEAAKLKK-KRWAVVYPNYEYGQSSVATFKTLLKAAQ 192

Query: 193 LGVEHIGNSYHSLQEQEFSGYLTNAIA-AKPDVLVLLNFGSQASNALRQAVNFGIKDRMK 251
             VE +      L + + SG +  A+A AKPD +  + FG+  S  +R+    G+    +
Sbjct: 193 PDVEFVAEQAPPLGKVD-SGSVVQALADAKPDAIFNVLFGADLSKFVREGNTRGLFKDRE 251

Query: 252 VLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAATRKAYGINPNYPLAAD 311
           V+ V +   +    L  +   G  +    W+ V TP +K  + A +  +   P       
Sbjct: 252 VVSVLTGEPEYLDPLKDEAPNGWIVTGYPWYGVKTPEHKAFLDAYQAKFKDYPRLGSVVG 311

Query: 312 YIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELIRPGDHQVLKDYYLLRGKPQG 371
           Y     ++  I KAG  D   + AA +G++   P G+   R  D+Q     Y+ + K  G
Sbjct: 312 YSAIHSIVAGIQKAGGTDTEKLVAAFKGLQVDTPFGKINYRAQDNQSTMGAYVGKTKNDG 371