Pairwise Alignments

Query, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 408 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score = 91.3 bits (225), Expect = 5e-23
 Identities = 92/369 (24%), Positives = 150/369 (40%), Gaps = 17/369 (4%)

Query: 3   RRTLLKAGLALGALGSLPLG----AHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLA 58
           RR + +A  A     ++PL     A    A  P+    L   +G FA+Y    +  SR A
Sbjct: 6   RRLVSQAAAAAVLALTVPLAMQAQAQAQTATGPIKIGVLTIDAGPFATYASLVEDSSRAA 65

Query: 59  IA---EHPQLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKE 115
           +         LG   +  V    G    A+  V   + Q G  F  G T +S +LA+S +
Sbjct: 66  VDMLNAEGGALGRKFEVVVQSHAGTPSSAIAAVNRLVQQGGVSFVTGQTPTSHSLAISPK 125

Query: 116 IHKAGGVFMTPVG-ADEITGKDCNASTFRWSVP--TYGAIRETLVPMSRQLPQAKRWYTI 172
           +     + +      D++  K C  + FR + P   Y A+    V  S     AK W  I
Sbjct: 126 LAALNALMIDVYSQGDDLMTKACQPNFFRVTTPDSVYAAMLREFVKKSG----AKTWNLI 181

Query: 173 TPQYVFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGS 232
           +P Y  G         +    G     + + +    +F  Y+T  +A   D L++  + S
Sbjct: 182 SPDYAVGHTFAAKFSDIVKAQGGTVQMSLFAAQGTNDFGSYITQ-LAKPADALMVTLYMS 240

Query: 233 QASNALRQAVNFGIKDRMKVLMVWSAGLD-QFQELGSDVLEGVYLGAQYWHQVDTPLNKL 291
             ++  +Q   FG+ D+ K ++      + Q    G  VL GV  G  Y + +    N  
Sbjct: 241 DGNSFAKQQKQFGLFDKYKTVLGNGFATEFQLAAQGDSVL-GVLNGLSYHNTMPGERNAA 299

Query: 292 LVAATRKAYGINPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELI 351
            V +    +   P Y  A   +  +++  AIVKA S D +AV  AL G++     GE  +
Sbjct: 300 FVKSYEARFKRKPIYTDADMMVALEMLRAAIVKAKSTDVSAVRTALAGLKAPTVFGEVEM 359

Query: 352 RPGDHQVLK 360
           R  DH +++
Sbjct: 360 RAADHTLIR 368