Pairwise Alignments

Query, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 390 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 101/387 (26%), Positives = 165/387 (42%), Gaps = 29/387 (7%)

Query: 1   MQRRTLLKAGLALGALGSLPLGAHRAFADQPLTFYGL-KSMSGAFASYGKYADMGSRLAI 59
           MQRR L++      AL +L L    A A       GL   M+G  AS G+  +  +RL +
Sbjct: 1   MQRRHLIQTA----ALSALALSMSLASAQDNKFKIGLILPMTGQSASTGRQIEAAARLYM 56

Query: 60  AEHPQLL-GHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHK 118
           A++   + G  ++  V D  G      R  QE +  D      G  L+  ALAV+    +
Sbjct: 57  AQNGDTVAGKKVELIVKDDTGLPDVTKRLAQELVVNDKVNVLAGFGLTPLALAVAPIATQ 116

Query: 119 AGGVFMTPVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQ--AKRWYTITPQY 176
           +    +    A   T     AS +   + +   + +  V M    P+   K   T+   Y
Sbjct: 117 SKTPEVVMAAA---TSSITEASPY--IIRSSFTLPQVSVAMGDWAPKNGVKTVVTLVADY 171

Query: 177 VFGDALLDNARKVFAELGVEHIGNSYHSLQ----EQEFSGYLTNAIAAKPDVLVLLNFGS 232
             G+    +A K F+E  V + G     L+      +F+ +L     AKPD L +     
Sbjct: 172 GPGN----DAEKFFSERFVLNGGKVIEKLRVPLRNPDFAPFLQKVRDAKPDALFVFVPSG 227

Query: 233 QASNALRQAVNFGIKDRMKVLMVWSAGL---DQFQELGSDVLEGVYLGAQYWHQVDTPLN 289
             +  ++Q +  G+ D+  + M+ +  +   DQ  ++G   L GV     Y     + +N
Sbjct: 228 AGAAVMKQFLERGM-DKAGIKMIATGDVTDDDQLNDMGDGAL-GVVTSHHYSAAHPSAMN 285

Query: 290 KLLVAATRKAYG-INPNYPLAADYIGTKVMLEAI-VKAGSLDGAAVSAALQGMRFQGPTG 347
           K  V A  KA   + PN+     Y G +V+ EA+    G   G A+ AA++G  F+ P G
Sbjct: 286 KKFVEAFEKANPKMRPNFMAVGGYDGMRVIYEALKTTKGQGGGEALLAAMKGQVFESPRG 345

Query: 348 EELIRPGDHQVLKDYYLLR-GKPQGQM 373
           + LI      +++D YL +  K  GQ+
Sbjct: 346 QVLIDAQTRDIVQDVYLRKVEKKDGQL 372