Pairwise Alignments

Query, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 409 a.a., ABC transporter, substrate-binding protein RSc1750 from Variovorax sp. SCN45

 Score = 68.2 bits (165), Expect = 4e-16
 Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 18/342 (5%)

Query: 37  LKSMSGAFASYGKYADMGSRLAIAEHPQLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQD- 95
           L  +SG  A+ G      ++    E  +     +K++VI  +               QD 
Sbjct: 33  LDPLSGLMAAVGTNQLKTTQFLAEEFNKKNQSGVKFEVIGIDNKLSPQETTAALRSAQDQ 92

Query: 96  GARFFQGCTLSSSALAVSKEIHKAGG-------VFMTPVGAD-EITGKDCNASTFRWSVP 147
           GAR+      S  ALA+   I K          ++M     D ++T   C+   FR    
Sbjct: 93  GARYIMQGNGSGPALAIIDAIEKNNSRNPGKELLYMNYAAVDPDLTNSKCSYWHFRVDAD 152

Query: 148 TYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDALLDNARKVFA--ELGVEHIGNSYHSL 205
           T   + E L    +     K+ Y +   Y  G  +   A++        ++ +G   H L
Sbjct: 153 TSMKM-EALTTWMKDQADIKKVYLLGQNYAHGVQVAKYAKEDLKVKRPDIQIVGEDLHPL 211

Query: 206 -QEQEFSGYLTNAIAAKPDVLVLLNFGSQASNALRQAVNFGIKDRMKVLMVWSAGLDQFQ 264
            Q ++FS Y+    A+  D ++  N+GS  S  ++ A + G+   +K L  ++ G     
Sbjct: 212 AQVRDFSPYIAKIKASGADTVITGNWGSDLSLLIKAANDSGLN--VKFLTYYAPGAGTPT 269

Query: 265 ELGSDVLEGVYLGAQYWHQVDTPLNKLLVAATRKAYGINPNYPLAADYIGTKVMLEAIVK 324
            +G+     VY  A   + +   + +LL    ++   +N +   A+ Y    ++  A  K
Sbjct: 270 AMGATSDGKVYTVAYAHYNMGGEIQQLLNGYKKR---MNDDLTQASIYHVFALLDAAFAK 326

Query: 325 AGSLDGAAVSAALQGMRFQGPTGEELIRPGDHQVLKDYYLLR 366
             S D   V+AAL+GM+ +   GE  +R  DHQ+ +  Y+ R
Sbjct: 327 TKSTDPVKVAAALEGMKIKSFNGEVEMRKSDHQLQQGLYISR 368