Pairwise Alignments

Query, 286 a.a., Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 306 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  202 bits (513), Expect = 1e-56
 Identities = 116/298 (38%), Positives = 165/298 (55%), Gaps = 18/298 (6%)

Query: 4   LYLFQLLNGLGLGMIYFLIAVGLTIIFGLLNFVNFAHGAFFLLGAYLCYTAVAVTGNFWL 63
           L L QLLNGLG G++ FL+A GLT++FG+++ +N AHG+ F+ GAY+   A   TG+F  
Sbjct: 5   LVLEQLLNGLGYGLMLFLLAAGLTLVFGIMDVLNLAHGSLFMAGAYVAAEAHTRTGSFAA 64

Query: 64  ALLIAPLVVAALAWAVERLLIKRIYHLPHTFQILVTLGIALIIQEASVLIWGPVGKNIAV 123
           A++IA  V   +A  +E LL++R+Y   H  Q+L T G+ L+  +   + WGP       
Sbjct: 65  AIVIAVAVTVVVALLLEVLLMRRLYTRDHLAQVLATFGVILVADDIVTMAWGPSPVMAPT 124

Query: 124 PPELRGVLILGDFI-YPYYRLFLIGFAALIGIGLWLLLERTRFGALVRAGSESTETVSLL 182
           P  L G + L D + YP YRL ++    L+ + L+LL+  TR G  VRAG+       L+
Sbjct: 125 PAALSGPVQLMDGLPYPAYRLVILAGGLLVALALYLLVNHTRIGMRVRAGASDRPMAELM 184

Query: 183 GTNIFRLFSLTFALGVGLAGVAGVLFAPLRGAQPFVGPEILGIAFVVVVIGGMGSFGGAL 242
           G  + R+F+  F LG  LA +AG L  P+   Q  +G  IL  A VV+VIGG+GS  GA 
Sbjct: 185 GVRVGRIFNGVFLLGAALAALAGALMGPIVAVQVGMGEAILIPALVVLVIGGIGSVRGAF 244

Query: 243 VGGLLVGVVQSM-----------------MTSLWPQGASLMIYGAMAAVILVRPYGLF 283
           V  LLVGVV ++                    L P  A + +Y  M  V++ RP GLF
Sbjct: 245 VAALLVGVVDTVGRAFVPMLLRATLPPATAADLGPLFAEVAMYALMVVVLIFRPSGLF 302