Pairwise Alignments

Query, 286 a.a., Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 618 a.a., ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  201 bits (511), Expect = 3e-56
 Identities = 107/289 (37%), Positives = 166/289 (57%), Gaps = 5/289 (1%)

Query: 2   LDLYLFQLLNGLGLGMIYFLIAVGLTIIFGLLNFVNFAHGAFFLLGAYLCYTAV-----A 56
           +  +  Q LNGL      FL+A GL+IIFG+   VNFAHG+F++LGAY+ +T V      
Sbjct: 1   MSFFFIQFLNGLASASSLFLVASGLSIIFGVSRIVNFAHGSFYMLGAYMAFTLVQKLSGG 60

Query: 57  VTGNFWLALLIAPLVVAALAWAVERLLIKRIYHLPHTFQILVTLGIALIIQEASVLIWGP 116
               FW A+++A   VA +   VE +L++RIY  P   Q+L T G+ LI+Q+  +++WGP
Sbjct: 61  TVFGFWGAIVLAAAAVALVGAVVEMVLLRRIYQAPELLQLLATFGLVLIVQDLVLVLWGP 120

Query: 117 VGKNIAVPPELRGVLILGDFIYPYYRLFLIGFAALIGIGLWLLLERTRFGALVRAGSEST 176
                   P L+G + +    +P Y   LI    ++   LWLL  RTR+G L+RA ++  
Sbjct: 121 EDLLGPRAPGLKGAIDIFGQSFPQYDFVLIILGPVVLGLLWLLFHRTRWGTLIRAATQDR 180

Query: 177 ETVSLLGTNIFRLFSLTFALGVGLAGVAGVLFAPLRGAQPFVGPEILGIAFVVVVIGGMG 236
           E V+ LG N   LF+  F LG  LAG+ G +  P       +  +I+  AFV+VVIGG+G
Sbjct: 181 EMVAALGVNQAWLFTSVFTLGAFLAGLGGAVQLPREAVNHVMDLQIITEAFVIVVIGGLG 240

Query: 237 SFGGALVGGLLVGVVQSMMTSLWPQGASLMIYGAMAAVILVRPYGLFGR 285
           S  GA +  +++G + +    ++PQ   ++ +  MA +++VRP+GL G+
Sbjct: 241 SVLGAFLAAVIIGELNAFGILIFPQLTLVLTFLVMAVILVVRPWGLLGK 289



 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 81/281 (28%), Positives = 125/281 (44%), Gaps = 32/281 (11%)

Query: 17  MIYFLIAVGLTIIFGLLNFVNFAHGAFFLLGAYLCYTAVAVTGNFWLALLI-APLVVAAL 75
           +I+ L A  L  + G    V+F H A+F LG+Y     V   G   LA L+  PL+ AA 
Sbjct: 341 LIFALFAASLHFMMGTGGMVSFGHAAYFGLGSYGAALMVKYFGIPMLAALVTGPLLAAAA 400

Query: 76  AWAVERLLIKRIYHLPHTFQILVTLGIALIIQEASVLIWGPV--GKN--IAVPPELRGVL 131
           A       ++    L   +  ++TL  A I   A V  W     G N  I + P      
Sbjct: 401 ALVFGWFCVR----LAGAYLAMLTLAFAQIAY-AVVFQWSSFTGGDNGLIGIWPAPWAAN 455

Query: 132 ILGDFIYPYYRLFLIGFAALIGIGLWLLLERT--RFGALVRAGSESTETVSLLGTNIFRL 189
            +      +Y L L    AL G G+  +   T   FG  +RA  +S      +G N+   
Sbjct: 456 PVA-----FYYLTL----ALCGGGILAVRRITFAPFGYTLRACRDSALRADSIGINLSSH 506

Query: 190 FSLTFALGVGLAGVAGVLFAPLRGAQPFVGPEILGIA-----FVVVVIGGMGSFGGALVG 244
               FAL    AG+AG L+A L+G+   V P+ + IA      V+V++GG+ +  G +VG
Sbjct: 507 RWAGFALAGFFAGIAGSLYAFLKGS---VFPDTISIATSVDGLVMVLLGGVQTLTGPVVG 563

Query: 245 GLLVGVVQSMMTSLWPQGASLMIYGAMAAVILVR-PYGLFG 284
            L+   +   ++S   Q  + +  G +  V++V  P G+ G
Sbjct: 564 ALVYKTLHVTISSYTDQWRTAL--GVIIIVLVVAFPQGISG 602