Pairwise Alignments

Query, 339 a.a., Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 355 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  162 bits (411), Expect = 9e-45
 Identities = 113/345 (32%), Positives = 187/345 (54%), Gaps = 39/345 (11%)

Query: 5   NPLPVAKGRAPALLSLVV-ASLVALPLLLPSA---TLATEILIFAMAALACNLLLGYTGL 60
           N +P  + R  ALL +V+  +L   P + P     ++A +IL+F +   + +LLLGYTG+
Sbjct: 9   NDMP--RSRLLALLLVVLFLALAFAPFIFPGVKALSVAAKILVFVVLVASFDLLLGYTGI 66

Query: 61  LSFGQGIFFGVGAYGAALLMIHL--QWGMFAALLGAAV-FGAFLALLVGALAIRRTGIYF 117
           +SF   +FFG+GAYG A+    L   WG     LGA++     L+  +G  ++R   I+F
Sbjct: 67  VSFAHTMFFGIGAYGIAISASRLGPNWGAVLVGLGASLAISLVLSFAIGLFSLRVRAIFF 126

Query: 118 VMLTLAFSQMAYFLAYTLSGWTGGDNGLL----DVPRPNIEIAGHVLVDLA-DPR---HF 169
            M+TLA +     LA  LS +TGG++GL     ++  P+ E +    + ++ D R   ++
Sbjct: 127 AMITLAVASAFQTLASQLSDFTGGEDGLTFKLPELISPSFEFSEEPFLGVSLDGRLLCYY 186

Query: 170 YVFVAVLFLLIFAAALRVIRSPFGSTLLAIRENETRAAAIGYDTRHFKILVFMLSGAITG 229
            +FVA + L++  A LR++ SPFG  L AIRENE RA AIGY    ++    +LS     
Sbjct: 187 LLFVAAVVLVL--ALLRIVNSPFGRVLQAIRENEFRAEAIGYRVVVYRTTAAVLSALFAT 244

Query: 230 IAGALYAMLLHF-APLSNIDLMMSENILIMTIVGGTGSLFGSLLGAGAIVLLGDVLSEL- 287
           +AGA+ A+ L +  P +++   +  ++L++ ++GG G+++G+ +GA   V+    L +L 
Sbjct: 245 LAGAMLAIWLRYNGPDTSLSFEIMIDVLLIVVIGGMGTIYGAAIGAVLFVIAQSYLQDLL 304

Query: 288 -----------W-------PRWLMLLGVILILVVVFMRGGLWGGL 314
                      W        RWL+ LGV+ +L V +   G+ G L
Sbjct: 305 RIGNEAASGLPWLAALLSPDRWLLWLGVLFVLSVYYFPTGIVGKL 349