Pairwise Alignments

Query, 250 a.a., Branched-chain amino acid ABC transporter, ATP binding protein from Pseudomonas putida KT2440

Subject, 274 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Xanthobacter sp. DMC5

 Score =  163 bits (412), Expect = 4e-45
 Identities = 93/259 (35%), Positives = 153/259 (59%), Gaps = 11/259 (4%)

Query: 2   SDYLLETRHLELAYGPFKAVAGVDLKVRAGTIHTIIGPNGAGKTSLFHCLTGERQATAGK 61
           S  +L   H+ + +G   A+A +   V  G I ++IGPNGAGKT+ F+ +TG  + T G+
Sbjct: 6   SSAILNVEHVGMKFGGLTAIADLHFDVHEGEILSLIGPNGAGKTTAFNIMTGFLKPTQGR 65

Query: 62  ILFNGQDIIRKPSHGRVALGMARSFQLTSLFQNLSVRENLRLAAQ--GRDGLGALNFWR- 118
           +LF G+D+ +   +    LG+AR+FQ TS+F + SVR+N+ +     G D        R 
Sbjct: 66  VLFRGRDLSQTRPNEIARLGLARTFQRTSVFADDSVRDNVLIGLHRFGDDTRATALLDRL 125

Query: 119 -----SVEHKRSHWNTADQVLERLKLSARAETLAGELSHGQQRVLEVGMSICAKPTLLML 173
                +   + +    A+ +++ + LSARA   AG LS+G+QR++   +++  +P +L+L
Sbjct: 126 FPTPAARRAENAVRERAEAIIDMVGLSARAGDKAGSLSYGEQRLVGFALALAVEPKMLLL 185

Query: 174 DEPTSGMGIDDIPVMTDLISDLGRDH--TVLLIEHNMSIVMSISQRITVMSHGQILVEGT 231
           DEP SGM   +      LI  + RD   T+LL+EH+M +VM +S RI  +++G+++ EG 
Sbjct: 186 DEPVSGMNASETQGFVRLIRKV-RDEGVTILLVEHDMPMVMEVSDRIVCLNYGRLIAEGP 244

Query: 232 PEQVRNDERVRTAYLGEAA 250
           PE +R D +V  AYLG++A
Sbjct: 245 PEAIRTDPKVIEAYLGKSA 263