Pairwise Alignments

Query, 617 a.a., Acetoin catabolism regulatory protein from Pseudomonas putida KT2440

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  325 bits (832), Expect = 5e-93
 Identities = 242/625 (38%), Positives = 324/625 (51%), Gaps = 44/625 (7%)

Query: 17  LKNADRLPQAPVPPLILDSWRRSMDVYRLD--PGSQQGPRILSQSLLNECRERAELFLRI 74
           L +   LP   +   I  SWRRS+  + LD   G Q G  +     L    ER  L +  
Sbjct: 23  LASEGELPLGMLRDEIDASWRRSLG-HGLDCLQGEQVGLGLEQGHDLRLLLERNRLLIDA 81

Query: 75  ASDAVARLHERVRGADYCVLLTDAQGRTIDYRVESAIRNDCRKAGLYLGTCWSEGEEGTC 134
            +  +  L  R +G    V+L DAQ   +    +  +        L+ G+CWSE   GT 
Sbjct: 82  VTPELDYLVAR-QGKAGIVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTN 140

Query: 135 GVAAVLTSKAPVTVHKRDHFRAAFIGLTCTAAPVFDPLGELLGVVDVS---ALQSPDDRR 191
            +   +    P  ++  +H+       +CT+ P+ DP GE++GV+D++    +  P D  
Sbjct: 141 AIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQDSL 200

Query: 192 SQHLIRQLVEQTAREIENAFFMHSAQGHWVMRAHGTPGYVESQPDYLLAWDADGRLQAIN 251
           S  ++       A  IE+  F        V+  H  P Y+ S    LLA   DG + A N
Sbjct: 201 STLML------AAGNIESRLFGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAAN 254

Query: 252 SLARQRLV----ERLGRLP-EHIGELFD--IDQLRRVSASSAQRLPGLGGL-------YG 297
             A Q L     E +GR   + +GE     I +L +   SS Q   G           +G
Sbjct: 255 DGACQLLQVPRHELIGRRSTDLLGERSPAFIARLWQGGVSSVQTAKGEFYFRALQLPRHG 314

Query: 298 RVSAPQQRQRAQPLRQAQ--------DTRIEQHLRLATRVKDCNLAVLVLGETGAGKEVF 349
           RV+      +    +Q+         D R+ ++LR+A +     L VL+LGETG GKEV 
Sbjct: 315 RVTPSTPSSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVV 374

Query: 350 ARQLHQQSQRCDGPFVTLNCAAIPESLIESELFGYVAGAFTGASSKGMQGLLQQADGGTL 409
           AR LHQ S R D PFV +NCAAIPE LIESELFGY  GAFTG+   GM G L QA GGTL
Sbjct: 375 ARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTL 434

Query: 410 FLDEIGDMPLNLQTRLLRVLAEGEVAPLGAARRERVDIQVICATHRDLAAMVEDGRFRED 469
           FLDEIGDMPL LQ RLLRVL E  VAPLGA   + +D+ +ICATHRDL  +V++  FRED
Sbjct: 435 FLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFRED 494

Query: 470 LYFRLANARFELPPLRERDDRLGLIHQLLAEEAAACGVEVVLADDALQALLV-YRWPGNL 528
           L++R+      LP LRERDD   +I  LL ++A A GV +   D AL ALL  + WPGN+
Sbjct: 495 LFYRVNGVSLRLPALRERDDLAAIIQGLL-DKADARGVTL---DPALTALLEGFDWPGNI 550

Query: 529 RQLRQVLRYACAVSEGGQ--VRLQDLPQEVRGEAVGSAESGVSCPARQL--LLDALIRHR 584
           RQL  V+R A A+ E G+  + L  L   +  E   SA    S    +L  +  AL RH+
Sbjct: 551 RQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELASSAAPSGSLKDSELEQIRGALARHQ 610

Query: 585 WKPADAARALGISRATLYRRVHEHR 609
              + AA ALGISRATLYR++ + R
Sbjct: 611 GNVSAAAAALGISRATLYRKLKQLR 635