Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 642 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodanobacter sp000427505 FW510-R12

 Score =  368 bits (945), Expect = e-106
 Identities = 251/678 (37%), Positives = 365/678 (53%), Gaps = 70/678 (10%)

Query: 1   MQSNHF-TRHARQVHSV--AHGGAGEGGSDP------SIARSWLRCLEDYHLDPAVIEAP 51
           MQ   F  RH   V S+  A     +GG +P      +I  SW RC +   +  A  +  
Sbjct: 1   MQHMRFHVRHPALVESINTARRSFFDGGLEPRGLVPDNILASWHRCRQQGLVANACPDVA 60

Query: 52  VVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERR 111
            V  H  L E +ER   + ++   E+ +L+   + AG  V+LT   G IL+ +       
Sbjct: 61  PVERHA-LSEMQERYEALRRMCRPELETLYASANQAGSIVILTAPDGFILDALGNTDFLD 119

Query: 112 SFERAGLWLGADWSEAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHG 171
              R  L  G+ W+E+  GTN IGT L+ER A+ +H  EH+   H  L+CSASP+FDPHG
Sbjct: 120 KAARVALRPGSPWNESATGTNAIGTALIERCAVEVHGGEHYYAPHRVLSCSASPIFDPHG 179

Query: 172 DLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGL 231
           +++ VLD+S      S     H + +V L+ + IE   F  HF++  ++R     + +G 
Sbjct: 180 NVVGVLDLSGE----SSVHHLHALGMVQLAVEQIEHRLFEGHFDRTDIVRIQPDPDLLGT 235

Query: 232 FSEGLLAFDGDGRICAANQSALNLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVW 291
             EG+L F+   R+ AAN+ AL LLG V    LGK         +DE+F+ A P   ++ 
Sbjct: 236 AREGMLVFEAH-RLVAANRHALRLLG-VDWSELGKR-------RYDELFASALPRPGSLA 286

Query: 292 PLRTLDGRQVFA---SLRGQARAPVWSVPA-AQPRPAGEVEPLVCLLDPALQNDFRRSVR 347
            +R  +G  + A   +L   + AP   VP  A+ RPA      V +   AL  +  RSVR
Sbjct: 287 DMRCQNGEMLHAWRDALSYNSIAP--RVPRNARARPA---RAPVAVFSAALDAEIDRSVR 341

Query: 348 VFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGS 407
           +   D+PLLL+GETG GKE  A+ +H+ S+R G PFVA+NCA++PE+LIESELFGY  G+
Sbjct: 342 LLNADIPLLLQGETGTGKEVVARELHKRSQRAGMPFVAVNCAALPENLIESELFGYMPGA 401

Query: 408 FTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGG-EPQAVDVR 466
           FTGAR++G  G L  ADGG L LDE+GDMPL  Q+RLLRVL+ER+V P+GG    A+D+ 
Sbjct: 402 FTGARRDGAPGLLRSADGGILFLDELGDMPLGTQSRLLRVLQEREVTPLGGSRAHAIDIT 461

Query: 467 IVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQGQW-I 525
           +V+ATHRDL   VE+G FR DLYYR+    + LPA+RE  + A ++  L       Q  +
Sbjct: 462 VVAATHRDLATAVERGEFRADLYYRIAQSTLRLPALREHPEIAAVIRQLWHALGAEQIPM 521

Query: 526 DIEPRARQALLAFNWPGNVRQMRNVLRTLVALCE-DARITFADLPAVIRTSPPLAGVGEP 584
            + P   + L + +WPGN RQ+  +LR+ +AL E  + +T  DLPA ++  P        
Sbjct: 522 HLHPTLVKDLASMSWPGNQRQLVGLLRSFMALGEVGSTLTIDDLPADMKKPP-------- 573

Query: 585 AKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHL 644
                                S  +  A ++ G+      L    +QA+   + A   ++
Sbjct: 574 ---------------------STTAPMATDLSGD------LHAIGQQAIDLAISACDGNV 606

Query: 645 TRVAEHLGISRNTLYRKL 662
              A  LG+SR+T+YR+L
Sbjct: 607 AAAARKLGVSRSTIYRRL 624