Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 605 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  322 bits (824), Expect = 4e-92
 Identities = 229/653 (35%), Positives = 335/653 (51%), Gaps = 71/653 (10%)

Query: 27  DPSIARSWLRCLE---DYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQ 83
           D  I  SW RC     D+   P+  + P      +LLES+   H ++Q    E+   ++ 
Sbjct: 8   DTLIQESWRRCRAFGLDHQSTPSFDQLPAE-GISQLLESQ---HSLVQTTHQEVLPYYEN 63

Query: 84  -LSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQ 142
            LS +   ++L D +G +L               G   GA W E   GTN IGT L   Q
Sbjct: 64  ILSNSNCLIMLADNQGQVLTSWGTQRFIDPKLARGFNPGASWMERSSGTNAIGTALACAQ 123

Query: 143 ALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSA 202
           A+ I  +EHF   +  +T SA+P+FD   +++AVLDVSS     S     HT+ +V + +
Sbjct: 124 AVHIEHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSD----SYLPPSHTLGMVKMMS 179

Query: 203 KMIESCYFLRHFE-QQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRG 261
           + +E+   L  F  + + L F+    ++     GLL FD  G++ +AN+ A NLLG    
Sbjct: 180 QTVENRLILNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGISLS 239

Query: 262 GVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQP 321
            V+   ++  F  S  E+ ++  P G   + L+     +    LR   + PV +    +P
Sbjct: 240 RVM---IDSLFKVSLLELLNQ--PEGLP-FSLQAAGRNRFQCVLRRPKQMPVQARVFTEP 293

Query: 322 RPAGEVEPLVCLL---DPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASER 378
            P       +  L   D  ++   R++ R+ E+D+PLL+ GETG GKE F +A+HQAS R
Sbjct: 294 TPPTPASIGLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSR 353

Query: 379 RGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPL 438
             K F+A+NCA+IP  L+ESELFGY  G+FTGA ++G  G + +AD GTL LDEIGDMPL
Sbjct: 354 SQKAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPL 413

Query: 439 ALQTRLLRVLEERQVVPIG-GEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEV 497
             Q RLLRVL+ER V P+G  E   VD+RI+SAT+R L E V+ G FREDLYYR+ GL +
Sbjct: 414 PTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTL 473

Query: 498 ALPAVRERSDKAQLLDFLLRQETQ-GQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVA 556
            LP +RER+DK  L   L +Q  +  QW  +            WPGN+RQ+ +VL+  +A
Sbjct: 474 ELPPLRERTDKQALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALA 533

Query: 557 LCEDARITFADLP----AVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGA 612
           + E+  I    LP      ++  PPL                                 A
Sbjct: 534 MAEEQPIRAEHLPDDFFVDLKVDPPLP--------------------------------A 561

Query: 613 AEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKH 665
           +E   +S             L + L+A   +++ +A  LG+SRNTLY++LR+H
Sbjct: 562 SEYLDDSID-----------LNQRLKAAGGNISHLARELGVSRNTLYKRLRQH 603