Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 621 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  427 bits (1097), Expect = e-124
 Identities = 261/643 (40%), Positives = 356/643 (55%), Gaps = 72/643 (11%)

Query: 33  SWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSGAGHAVL 92
           SW R +E +HLDP  ++ P +L    L E RER    ++IA  E+  LH ++  A + V+
Sbjct: 35  SWRRSMEQHHLDPGSLQGPRILSEPLLRECRERADLFMRIASEEVGQLHHRVRHADYCVM 94

Query: 93  LTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTIHQNEHF 152
           LTDA+G  ++     + R    +AGL+LG  WSEA EGT G+ T L  + A+T+H+ +HF
Sbjct: 95  LTDAQGQTIDHRVDTSIRNDCRKAGLYLGTCWSEAEEGTCGVATVLTSQSAVTVHKRDHF 154

Query: 153 RGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLR 212
           R    GLTCSA+P+FDP G+LL V+D S+ +    R+SQ     +V  SA+ IE+ +F+ 
Sbjct: 155 RAAFIGLTCSAAPIFDPQGNLLGVMDASALKSPDDRRSQHLVRQMVAQSAQAIENAFFMH 214

Query: 213 HFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGV---LGK--P 267
              Q W+L+ H     V    + LLA+D DGR+ A N  A   L    G V   +G    
Sbjct: 215 SARQHWVLQAHSTPGYVDSQPDLLLAWDQDGRLHALNSKARQALRRRFGQVPEHIGDVFD 274

Query: 268 LECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAGEV 327
           L+   A +HD        G   V  +R      V A  R  ARA V              
Sbjct: 275 LDALRAVTHDATQQLPWLGEPGVLHVR------VNAPRRKPARAAV-------------- 314

Query: 328 EPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAIN 387
              + L+D  ++   R ++RV  R++P+L++GETG GKE FA+ +H+ S R   PFVA+N
Sbjct: 315 ---IPLVDARVEEHLRLALRVKNRNLPVLVQGETGAGKEVFARQLHERSARHTGPFVAVN 371

Query: 388 CASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRV 447
           CA+IPE+LIESELFGY  G+FTGA  +GM G L+QADGGTL LDEIGDMPLALQTRLLRV
Sbjct: 372 CAAIPENLIESELFGYVAGAFTGASSKGMPGLLVQADGGTLFLDEIGDMPLALQTRLLRV 431

Query: 448 LEERQVVPIG-GEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERS 506
           + E +V P+G  + +AVD+ ++ A+HRDL   V +G FREDL++RL      LP +RER+
Sbjct: 432 MAEGEVAPLGAAKTRAVDIHVICASHRDLSVLVSEGRFREDLFFRLGCARFCLPPLRERT 491

Query: 507 DKAQLLDFLLRQETQGQWID--IEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARIT 564
           DK  L++ LL QE +   +   I P A Q LL + WPGNVRQ+R+VL    A+CE   + 
Sbjct: 492 DKLALINRLLEQEARNSRVSVGIAPSALQLLLGYAWPGNVRQLRHVLAYACAVCEGGTVQ 551

Query: 565 FADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEV 624
            ADLP                     E+ GE VA                     A TE 
Sbjct: 552 VADLPV--------------------EVRGEQVA---------------------APTED 570

Query: 625 LLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667
               ERQ + + L    W     A+ LGISR TLYR++ + GI
Sbjct: 571 RASPERQVVLDALIRHRWKPLPTAQALGISRATLYRRVNQLGI 613