Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  221 bits (563), Expect = 8e-62
 Identities = 181/577 (31%), Positives = 260/577 (45%), Gaps = 80/577 (13%)

Query: 120 LGADWSEAREGTNGIGTCLVERQALTIHQNEHFRG--RHTGLTCSASPVFDPHGDLLAVL 177
           +G+   E+ +GTN  G  L E   + +   E+F    R   + C+A+P+ +  G  +A+L
Sbjct: 128 VGSRLLESVQGTNCTGLALAEDHLVYVLAEENFGIGLRQRRMHCAAAPIKNTQGQTVAML 187

Query: 178 DVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRHF--EQQWLLRFHLQAESVGLFSEG 235
            ++ A P       FHT+  V  +A+ +     L     EQQ +L          + +EG
Sbjct: 188 TLT-AEPG---WFHFHTLGTVQAAAEAVSRQMALHGLLEEQQTVLE---------VLNEG 234

Query: 236 LLAFDGDGRICAANQSALNLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRT 295
           L+  D  G I A N+ A  L G V   ++G+P +        +    A       + L  
Sbjct: 235 LVVLDERGCIKALNRYARQLFG-VGLELIGRPFQQLGRSELSDSMGEAVRDRDCTFHLHN 293

Query: 296 ------------LDGRQVFASLRGQARAPVWSVPAAQPRPAGEVEPLVCLLDPALQNDFR 343
                       L+   V  SLR   R    +      + +   + +      A+Q+   
Sbjct: 294 RSQLACLVSVCPLEQGGVIVSLRENRRIREITRRIIGTQASYTFDTIQGS-SRAIQDALH 352

Query: 344 RSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGY 403
                   D   L+ GE+G GKE FAQA+H  S+R   PFVA+NC +IP  L++SELFG+
Sbjct: 353 LGRIASRSDSTTLILGESGTGKELFAQAIHNGSDRCNGPFVAVNCGAIPRDLVQSELFGH 412

Query: 404 RGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGE-PQA 462
             G+FTG+ + G  GK   ADGGT+ LDEIGDM    Q  LLRVL+E ++  +G +  + 
Sbjct: 413 VEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEITRVGAKNSRQ 472

Query: 463 VDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLL--DFL----- 515
           VDVRI++ATHR+L + V QG+FREDLYYRLN L + +P +R R +   LL   FL     
Sbjct: 473 VDVRIIAATHRNLSQAVAQGAFREDLYYRLNVLNLTVPPLRMRREDIPLLARHFLARCAR 532

Query: 516 -LRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRT 574
            LR+  QG      P A   L A+ WPGNVR++ N +     L   A I   DLP   R 
Sbjct: 533 SLRKSVQG----FSPEAMALLSAYGWPGNVRELENSIERATNLAMGALIEPVDLPLENRQ 588

Query: 575 SPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALK 634
             PL    EP    D                                   L   ER A+ 
Sbjct: 589 RAPLRAY-EPQAAQD-----------------------------------LSSHERHAIV 612

Query: 635 EVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGITRGD 671
             L     ++   A  L +SR  LY K+ + G+   D
Sbjct: 613 AALTNTGGNIRLAARQLNVSRGGLYNKMSRFGLNAAD 649