Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 462 a.a., Transcriptional response regulatory protein GlrR from Variovorax sp. SCN45

 Score =  209 bits (533), Expect = 2e-58
 Identities = 133/298 (44%), Positives = 174/298 (58%), Gaps = 11/298 (3%)

Query: 283 ATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAGEVE--PLVCLLDPALQN 340
           AT  G   +  +  DGR++   +   A+A     PA  P  AG+      +      +  
Sbjct: 95  ATARGVFTYLTKPYDGRELLDKI---AQALALGAPATTPSKAGDDSWRSEIVSRSNRMAE 151

Query: 341 DFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESEL 400
               +  V + D  +LLRG++G GKE  A+A+H+AS R  KPFVA+NC +IPE+L+ESEL
Sbjct: 152 LLAEARMVAKSDASVLLRGDSGAGKELLARAIHKASARADKPFVAVNCGAIPEALLESEL 211

Query: 401 FGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGEP 460
           FG+  G+FT A     +G   QADGGTLLLDEIGDMP ALQ +LLRVL+ER V P+G   
Sbjct: 212 FGHMKGAFTDAH-ANHKGLFQQADGGTLLLDEIGDMPPALQVKLLRVLQERAVRPLGASQ 270

Query: 461 Q-AVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLL--DFLLR 517
              VDVRIVSATHRDL   +E G FREDLYYRLN + + LP +  R +   LL   FL R
Sbjct: 271 SIQVDVRIVSATHRDLDAAMEAGQFREDLYYRLNVVTLTLPPLSARREDIPLLANHFLQR 330

Query: 518 QETQ-GQWID-IEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIR 573
             T+ G+ +    P A +AL    WPGNVRQ+ NV+  + AL     I  A +   +R
Sbjct: 331 LSTKYGKRLSGFAPEALKALTTAAWPGNVRQLFNVVEQVCALSSSPLIPLALVQRALR 388



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 28/181 (15%)

Query: 64  ERLHQVLQIADHEMNSLHQQLSGAGHAVLL---------TDARGVILNCVSAPAERRSFE 114
           E L +   +A  + + L +  SGAG  +L           D   V +NC + P      E
Sbjct: 151 ELLAEARMVAKSDASVLLRGDSGAGKELLARAIHKASARADKPFVAVNCGAIPEALLESE 210

Query: 115 RAGLWLGADWSEAREGTNGI------GTCLVER----------QALTIHQNEHFR--GRH 156
             G   GA +++A     G+      GT L++           + L + Q    R  G  
Sbjct: 211 LFGHMKGA-FTDAHANHKGLFQQADGGTLLLDEIGDMPPALQVKLLRVLQERAVRPLGAS 269

Query: 157 TGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQ 216
             +      V   H DL A ++    R D+  +    T+ L  LSA+  +      HF Q
Sbjct: 270 QSIQVDVRIVSATHRDLDAAMEAGQFREDLYYRLNVVTLTLPPLSARREDIPLLANHFLQ 329

Query: 217 Q 217
           +
Sbjct: 330 R 330