Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 631 a.a., no description from Variovorax sp. SCN45

 Score =  355 bits (910), Expect = e-102
 Identities = 248/648 (38%), Positives = 349/648 (53%), Gaps = 66/648 (10%)

Query: 28  PSIARSWLRC--LEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLS 85
           P I+RSW R   ++  ++DPA    P+ L    L E RE+  ++L  A  E++ L +   
Sbjct: 31  PHISRSWQRSRPVDHQYIDPA----PMAL--ALLRERREQSMRLLDCAQPELDGLAEHAI 84

Query: 86  GAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALT 145
           G G  V+L+DA G+IL  + +P      ER  L  G +WSE   GTN IGT L ER+AL 
Sbjct: 85  GNGCVVILSDASGLILEEIGSPDFLPKAERIALQPGVEWSENNRGTNAIGTALAEREALM 144

Query: 146 IHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMI 205
           +   EH+  ++  L C+A+P+F   G+L   LD+S     V+     H + LV ++A+ +
Sbjct: 145 VLGGEHYLAQNGALGCAAAPIFTGRGELAGALDISGETVRVNT----HALGLVRMAAQQV 200

Query: 206 ESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLG 265
           E    L    Q  +LRFH +   +G   EGL+  +G GRI AAN+ AL L G    G+L 
Sbjct: 201 EHRMLLAE-AQGHVLRFHARPALIGTAREGLMVIEG-GRIVAANRVALELFGRSWDGLLD 258

Query: 266 KPLECFFACSHDEMFSRAT----PGGSAVWPLRTLDGRQVFASLRGQAR--APVWSVPAA 319
                F   +   M  R +    PGG  +    T+  R    S RG AR  A     PAA
Sbjct: 259 LEARDFLGPNWPRMEHRRSLLTLPGGRQI---ATVMER---TSTRGGARPMARRADAPAA 312

Query: 320 QPRPAGEVEPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERR 379
                 E + ++ LLD A        VRV    V +L+ GETG GKE F++ +H AS R 
Sbjct: 313 TGAARPEADDILPLLDKA--------VRVLNEGVSVLVNGETGSGKEVFSRRLHAASRRA 364

Query: 380 GKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLA 439
             PFVA++CAS+PE+LIESELFGY  G+FTGAR++GM G++ +A GG L LDEI ++PLA
Sbjct: 365 AGPFVAVDCASLPETLIESELFGYDEGAFTGARRKGMAGRIREAHGGVLFLDEIAEIPLA 424

Query: 440 LQTRLLRVLEERQVVPI-GGEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVA 498
           LQTRLLRVLEER V P+ GG+  AVD  +V ATH DL   V+ G FR DL YR+ G  VA
Sbjct: 425 LQTRLLRVLEERVVTPLGGGQGVAVDFDLVCATHGDLPALVKAGRFRADLMYRVAGFTVA 484

Query: 499 LPAVRERSDKAQLLDFL-LRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVAL 557
           LP +  R+D+  L+  L L      + + +E  A +AL A+ WPGNVR++R+ LR +VAL
Sbjct: 485 LPPLSRRADRHTLIARLFLESGGAAKHLRLESDALEALAAYRWPGNVRELRSTLRAVVAL 544

Query: 558 CEDA-RITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIE 616
            +    +T A LPA +  +         A  +D   E          A + ++G    I 
Sbjct: 545 ADTGDSVTAAALPAHLLGT-------HAAPTTDAATEA---------ALAPQAGPLQAI- 587

Query: 617 GESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRK 664
                        R A+ E L+A    +++ A  LG+ R+T+YR + +
Sbjct: 588 ------------TRHAIDEALKACDHDVSKAARRLGVHRSTVYRHIAR 623