Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 641 a.a., Transcriptional activator of acetoin dehydrogenase operon AcoR from Variovorax sp. SCN45

 Score =  433 bits (1114), Expect = e-125
 Identities = 263/675 (38%), Positives = 372/675 (55%), Gaps = 59/675 (8%)

Query: 7   TRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERL 66
           +RH   V+S+A G A    +   + +SW RC+ D+ LDP+      +L    +   +++L
Sbjct: 6   SRHIDNVYSIATGAALADPTQSLVHKSWARCVRDHGLDPSKPTPARILPAQEVRAHQQQL 65

Query: 67  HQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSE 126
              L+ A   M  ++++++  G+ VLLTDA G+ ++ +  PA      +AGL+LGADW+E
Sbjct: 66  EHFLRAARAGMEDIYRRVADLGYMVLLTDAEGITVDYIGNPAWDDQLRKAGLYLGADWNE 125

Query: 127 AREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDV 186
           A  GT G+GTCLVERQ +T HQ EHF   H  LTC+ +P+FD  G L A+LDVS+ R   
Sbjct: 126 AHAGTCGVGTCLVERQPMTCHQTEHFDATHIALTCTTAPLFDHSGKLTAILDVSALRSPE 185

Query: 187 SRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRIC 246
           +++SQ     LV++ A+MIE   FLR+F   W+LR       V +  E +LAFD  G + 
Sbjct: 186 AKESQHLVRHLVSMYARMIEDADFLRNFRGHWILRLGSAFGLVDVAGEVMLAFDDGGTLA 245

Query: 247 AANQSAL-----NLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQV 301
            AN  A      + L      +L  P++  +   +    S   P    V       G + 
Sbjct: 246 GANGGARQAFAGHALSGAVSELLHMPMDAIWRIGNGGAISPLMPFAHTV---LLPGGGEY 302

Query: 302 FASL----RGQARAPVWSVPAAQPRPAGEVEPLVCLL--DPALQNDFRRSVRVFERDVPL 355
            ASL      +A+AP  + P+A  RP+  + PL  +   DPA+Q    ++ R+ +R + +
Sbjct: 303 HASLIAPRSRRAQAPATAAPSA--RPSDRLPPLERIAGDDPAMQKLLAQARRLVDRGIHV 360

Query: 356 LLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEG 415
           L+ GETG GKE  A+A+H AS R   PFVA+NCA+IP+SLIESELFGY  GSFTG R +G
Sbjct: 361 LVEGETGSGKEVLARALHSASSRAAMPFVAVNCAAIPDSLIESELFGYTPGSFTGGRAKG 420

Query: 416 MRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGE-PQAVDVRIVSATHRD 474
           M+G + QAD GTL LDEIGDMP+ALQTRLLRVL E +V+P+G E PQ VD+ +V+ATHR 
Sbjct: 421 MKGLIAQADRGTLFLDEIGDMPMALQTRLLRVLSEGEVLPLGAESPQRVDIAVVAATHRH 480

Query: 475 LLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQG--QWIDIEPRAR 532
           L   V  G FREDLYYRL G  + LP +R R D   L++ +  +E         +   A 
Sbjct: 481 LPGLVASGRFREDLYYRLCGAVLKLPPLRARGDMRYLIEGMFNEEAAAMPSPARLSEEAM 540

Query: 533 QALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEM 592
           Q LLA +WPGN+R++RN LR  +ALC  A ++  DL    R             + D E 
Sbjct: 541 QRLLAHDWPGNLRELRNALRLALALCTGASVSAQDLQLQARAD----------TVCDTEP 590

Query: 593 EGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLG 652
           + E VA                             AE + L + L+   W +   A+ LG
Sbjct: 591 D-EDVA-----------------------------AEARRLLDALKRHRWRVAHAADELG 620

Query: 653 ISRNTLYRKLRKHGI 667
           +SR T YR +++ GI
Sbjct: 621 MSRATAYRHMKRLGI 635