Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  337 bits (863), Expect = 1e-96
 Identities = 247/671 (36%), Positives = 358/671 (53%), Gaps = 62/671 (9%)

Query: 5   HFTRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIE-APVVLEHG---RLL 60
           H +R AR +   + G    G     I  SW R L  + LD    E   + LE G   RLL
Sbjct: 14  HESREAR-LKLASEGELPLGMLRDEIDASWRRSL-GHGLDCLQGEQVGLGLEQGHDLRLL 71

Query: 61  ESRERLHQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGL-- 118
             R RL  ++     E++ L  +   AG  V+L DA+    N ++   ++   +R GL  
Sbjct: 72  LERNRL--LIDAVTPELDYLVARQGKAG-IVILGDAQA---NVLAIEGQKHVLQREGLRD 125

Query: 119 -WLGADWSEAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVL 177
              G+ WSE+  GTN IGT +VE +   I+  EH+  R +  +C++ P+ DP G+++ VL
Sbjct: 126 LHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVL 185

Query: 178 DVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLL 237
           D++  R  V  Q Q  +++ + L+A  IES  F      Q +L FH + + +     GLL
Sbjct: 186 DIT--REGVMAQPQ-DSLSTLMLAAGNIESRLFGLCHPDQLVLAFHSRPQYLNSAWHGLL 242

Query: 238 AFDGDGRICAANQSALNLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLD 297
           A   DG + AAN  A  LL   R  ++G+              +R   GG  V  ++T  
Sbjct: 243 ALSLDGEVLAANDGACQLLQVPRHELIGRRSTDLLGERSPAFIARLWQGG--VSSVQTAK 300

Query: 298 GRQVFASLRGQARAPVW-SVPAAQPRPAGEVEPLVCLL--DPALQNDFRRSVRVFERDVP 354
           G   F +L+      V  S P+++P  + +   L  L   D  L  + R + +     +P
Sbjct: 301 GEFYFRALQLPRHGRVTPSTPSSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLP 360

Query: 355 LLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKE 414
           +LL GETG GKE  A+A+HQAS R  KPFVA+NCA+IPE LIESELFGYR G+FTG+R+ 
Sbjct: 361 VLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRG 420

Query: 415 GMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIG-GEPQAVDVRIVSATHR 473
           GM G+L+QA GGTL LDEIGDMPLALQ RLLRVL+ER+V P+G G+ Q +DV ++ ATHR
Sbjct: 421 GMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHR 480

Query: 474 DLLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQGQWIDIEPRARQ 533
           DL   V++  FREDL+YR+NG+ + LPA+RER D A ++  LL  +   + + ++P    
Sbjct: 481 DLKRLVQEQHFREDLFYRVNGVSLRLPALRERDDLAAIIQGLL-DKADARGVTLDPALTA 539

Query: 534 ALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEME 593
            L  F+WPGN+RQ+  V+RT +A+ ED                     GE     D   +
Sbjct: 540 LLEGFDWPGNIRQLEMVVRTALAMRED---------------------GEQVLTLDHLTD 578

Query: 594 GEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGI 653
                L+             E+   +A +  L D+E + ++  L     +++  A  LGI
Sbjct: 579 ----CLL------------DELASSAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGI 622

Query: 654 SRNTLYRKLRK 664
           SR TLYRKL++
Sbjct: 623 SRATLYRKLKQ 633