Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 591 a.a., putative sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  295 bits (756), Expect = 3e-84
 Identities = 214/638 (33%), Positives = 317/638 (49%), Gaps = 73/638 (11%)

Query: 30  IARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSG-AG 88
           I  SW RC   + L P        L    L    ER   +L++   E+   +  L G A 
Sbjct: 21  IQASWDRC-RAHGLQPQHAPDFDCLSRAELSALLERRQNLLRLTREEVLPHYAHLLGNAS 79

Query: 89  HAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTIHQ 148
           + V+L DA G +L+   +       +  G   GA W E   GTN +GT L+  +A+ + Q
Sbjct: 80  YLVMLADASGCLLDSWGSRRFIEPRQHHGFSAGAHWHERGVGTNALGTTLICAEAVHVGQ 139

Query: 149 NEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESC 208
           +EHF  ++  ++ +A+P+FD    L+  LDV+S     + Q    T+ LV +  + +E+ 
Sbjct: 140 DEHFLRQNRYMSSAAAPLFDAARQLVGALDVASDGYLPASQ----TLGLVRMMGQSLENR 195

Query: 209 YFL-RHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLGKP 267
             L  H +Q   L F+  ++++     GLL FD  G++ AAN  A +LLG      L + 
Sbjct: 196 LILAEHADQHAQLIFNSASDNLDSPWAGLLVFDERGQVLAANHRADSLLGV---NPLQQN 252

Query: 268 LECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAGEV 327
           +E  F     ++ S       A+       GR  F           W  P    R     
Sbjct: 253 IEQLFQLPLQQLLSHPRQQPFAL----QATGRNRFHCQ--------WHPPRETTR----- 295

Query: 328 EPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAIN 387
            P     +P L+    ++  + E+D+P+L+ GETG GKE F  A+H+AS R  +P VA+N
Sbjct: 296 RPEAGSAEPRLEKALIQAGLLLEKDIPVLVEGETGVGKEVFVDALHRASSRARQPLVAVN 355

Query: 388 CASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRV 447
           CA+IP  L+ESELFGY  G+FTGA  +G  G + +AD G L LDEIGDMPL  Q RLLRV
Sbjct: 356 CAAIPAELVESELFGYDKGAFTGAHHKGNPGLIRKADHGILFLDEIGDMPLPTQARLLRV 415

Query: 448 LEERQVVPIG-GEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERS 506
           L+ R + P+G GEP  VD+R+VSA++R+L + V  G FR+DLYYR+ GL + LP +RER+
Sbjct: 416 LQSRSIQPLGSGEPVPVDIRVVSASNRNLADEVRAGRFRQDLYYRIAGLTLVLPPLRERA 475

Query: 507 DKAQLLDFL-LRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITF 565
           D+ QL++ +  R    GQ   + P          WPGN+R++ +VL+  +AL  +  +  
Sbjct: 476 DRRQLIEQVHARYREPGQPARLPPAIIDLFDQHPWPGNLRELVSVLQVALALAANGPVGV 535

Query: 566 ADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVL 625
             LPA                                       G  AE     + T V 
Sbjct: 536 EHLPA---------------------------------------GFLAE-----SKTPVP 551

Query: 626 LDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLR 663
           +  E   L+ ++E  + +L+ VA  LGISR TLY++LR
Sbjct: 552 IATEETDLQSLVEQANGNLSAVARRLGISRTTLYKRLR 589