Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

 Score =  213 bits (541), Expect = 2e-59
 Identities = 136/338 (40%), Positives = 187/338 (55%), Gaps = 43/338 (12%)

Query: 336 PALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESL 395
           PA++    R++RV   D PLL+ GETG GKE  A+A H  S R   PF+A+NCA++PESL
Sbjct: 198 PAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHAVSSRHAAPFLALNCAALPESL 257

Query: 396 IESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVP 455
            ESELFGY  G+FTGA++ G  G +  A+ GT+ LDEIG+M   LQ +LLR L +     
Sbjct: 258 AESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRR 317

Query: 456 IGGEPQA-VDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRER-SDKAQLLD 513
           +GG+ +  VDVRI+SATHRDL   V +GSFREDL+YRLN L + +P +R+R  D   L  
Sbjct: 318 VGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVLNLEVPPLRDRGQDILMLAH 377

Query: 514 FLLRQ---ETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPA 570
           F ++Q   + Q     + P    ALLA  WPGNVRQ++NV+    A+CE   +   DL  
Sbjct: 378 FFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVIFRAAAICEGNLVDIGDLDI 437

Query: 571 VIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLL-DAE 629
                                    G ++ RGQ            +GE A  E  + D E
Sbjct: 438 A------------------------GTSVARGQ------------DGEVASLEQAVGDFE 461

Query: 630 RQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667
           R+ L+  L A +    ++A  L  S   + ++LRK+GI
Sbjct: 462 RELLQR-LYASYPSTRQLAGRLQTSHTAIAQRLRKYGI 498