Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 617 a.a., Acetoin catabolism regulatory protein from Pseudomonas putida KT2440

 Score =  401 bits (1031), Expect = e-116
 Identities = 254/643 (39%), Positives = 345/643 (53%), Gaps = 65/643 (10%)

Query: 28  PSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSGA 87
           P I  SW R ++ Y LDP   + P +L    L E RER    L+IA   +  LH+++ GA
Sbjct: 30  PLILDSWRRSMDVYRLDPGSQQGPRILSQSLLNECRERAELFLRIASDAVARLHERVRGA 89

Query: 88  GHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTIH 147
            + VLLTDA+G  ++     A R    +AGL+LG  WSE  EGT G+   L  +  +T+H
Sbjct: 90  DYCVLLTDAQGRTIDYRVESAIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTSKAPVTVH 149

Query: 148 QNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIES 207
           + +HFR    GLTC+A+PVFDP G+LL V+DVS+ +    R+SQ     LV  +A+ IE+
Sbjct: 150 KRDHFRAAFIGLTCTAAPVFDPLGELLGVVDVSALQSPDDRRSQHLIRQLVEQTAREIEN 209

Query: 208 CYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLGKP 267
            +F+   +  W++R H     V    + LLA+D DGR+ A N  A   L   R G L + 
Sbjct: 210 AFFMHSAQGHWVMRAHGTPGYVESQPDYLLAWDADGRLQAINSLARQRL-VERLGRLPEH 268

Query: 268 LECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVWSVPAAQPRPAGEV 327
           +   F    D++   +      +  L  L GR                   + P+     
Sbjct: 269 IGELF--DIDQLRRVSASSAQRLPGLGGLYGR------------------VSAPQQRQRA 308

Query: 328 EPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAIN 387
           +PL    D  ++   R + RV + ++ +L+ GETG GKE FA+ +HQ S+R   PFV +N
Sbjct: 309 QPLRQAQDTRIEQHLRLATRVKDCNLAVLVLGETGAGKEVFARQLHQQSQRCDGPFVTLN 368

Query: 388 CASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRV 447
           CA+IPESLIESELFGY  G+FTGA  +GM+G L QADGGTL LDEIGDMPL LQTRLLRV
Sbjct: 369 CAAIPESLIESELFGYVAGAFTGASSKGMQGLLQQADGGTLFLDEIGDMPLNLQTRLLRV 428

Query: 448 LEERQVVPIG-GEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRERS 506
           L E +V P+G    + VD++++ ATHRDL   VE G FREDLY+RL      LP +RER 
Sbjct: 429 LAEGEVAPLGAARRERVDIQVICATHRDLAAMVEDGRFREDLYFRLANARFELPPLRERD 488

Query: 507 DKAQLLDFLLRQETQ--GQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARIT 564
           D+  L+  LL +E    G  + +   A QALL + WPGN+RQ+R VLR   A+ E  ++ 
Sbjct: 489 DRLGLIHQLLAEEAAACGVEVVLADDALQALLVYRWPGNLRQLRQVLRYACAVSEGGQVR 548

Query: 565 FADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEV 624
             DLP                    QE+ GE V             G+AE        ++
Sbjct: 549 LQDLP--------------------QEVRGEAV-------------GSAESGVSCPARQL 575

Query: 625 LLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667
           LLDA        L    W     A  LGISR TLYR++ +H I
Sbjct: 576 LLDA--------LIRHRWKPADAARALGISRATLYRRVHEHRI 610