Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 671 a.a., Acetoin catabolism regulatory protein from Methylophilus sp. DMC18

 Score =  376 bits (965), Expect = e-108
 Identities = 241/640 (37%), Positives = 352/640 (55%), Gaps = 39/640 (6%)

Query: 29  SIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSGAG 88
           +IARSW RC+     + A  E  ++     L +  E+   +L  A+ EM +L +Q++   
Sbjct: 61  AIARSWRRCMVKGVDEQAPAEDQIITAQ-ELAQRLEKNRLLLAQAEPEMITLSEQIAHTR 119

Query: 89  HAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTIHQ 148
             V+LTD  GVIL  +    +     RA L  GA WSE   GTN IGT LVER A+++  
Sbjct: 120 SLVILTDHEGVILRTMGEGVDENQI-RASLLPGASWSEEHRGTNAIGTALVERLAISVQG 178

Query: 149 NEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESC 208
            EHF   H  L+CSA P+F  +  L+A LDVS+   D++   Q HT+ALV ++A+M+E+ 
Sbjct: 179 AEHFMAYHHSLSCSAVPIFAANNHLVATLDVSN---DLNAPQQ-HTLALVKMAAQMVENR 234

Query: 209 YFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLGKPL 268
            F    E +  + FH++ E +G   EG+  FD  G++   N+S     G           
Sbjct: 235 LFHATAEGEIAVHFHVRPEFIGTLWEGVALFDAAGQLQTINRSGQFQFGLPLDQDSLSAR 294

Query: 269 ECFFACSHDEM---FSRATPGGSAVWPLRTLDGRQVFA-SLRGQARAPVWSVPAAQPRPA 324
              F    DE    F +       ++PL   +G +++A +   QA +    +P   PR +
Sbjct: 295 RIAFEDIFDESWIAFKQRGLNTDVLFPLHLRNGARLYARASASQAPSAPKKMPPLAPRES 354

Query: 325 GEVEPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFV 384
                L+   DP  +    +  +V ++D+P+L+ GETG GKE F++A+H AS RR KPF+
Sbjct: 355 AASLELLDSGDPQFKLAITQVKQVLDKDIPVLILGETGAGKELFSRAIHDASARRHKPFI 414

Query: 385 AINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRL 444
           A+NCA++PE LIE+ELFGY  G++TGA+++G  GK+ QADGGTL LDEIGDMPL+LQ RL
Sbjct: 415 AVNCAALPEGLIEAELFGYEEGAYTGAKRKGNLGKIQQADGGTLFLDEIGDMPLSLQARL 474

Query: 445 LRVLEERQVVPIGGEPQA-VDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVR 503
           LRVL+ER V P+GG     V+  ++SAT++ L ++V  G FR DLYYR+NGL V LPA+R
Sbjct: 475 LRVLQERSVTPLGGSKSIPVNFMLLSATNQKLKDKVAAGEFRSDLYYRINGLSVQLPALR 534

Query: 504 ERSDKAQLLDFLLRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARI 563
           ER D A+L+  +L+ E Q     +         A  WPGNVRQ+ NVLRT VAL +   I
Sbjct: 535 ERLDMARLIQVILQIE-QAPQASLSEEVMALFNAHPWPGNVRQLHNVLRTAVALADGGVI 593

Query: 564 TFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTE 623
               L                AK +D E    G+A +                  +A  +
Sbjct: 594 GRQHLMQDFLDEML-------AKKADAEPSAVGMAAL-----------------PAASLK 629

Query: 624 VLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLR 663
           V  D   +A+++ +     +++ V+  LG+SRNTLYR+L+
Sbjct: 630 VQND---EAIRQAMLQHGGNISAVSRQLGLSRNTLYRRLK 666