Pairwise Alignments

Query, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 469 a.a., fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  217 bits (552), Expect = 1e-60
 Identities = 138/337 (40%), Positives = 190/337 (56%), Gaps = 18/337 (5%)

Query: 336 PALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESL 395
           PA+Q+ FR   R+    + +L+ GE+G GKE  A A+H+ S R   PF+A+N A+IP+ L
Sbjct: 145 PAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204

Query: 396 IESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVP 455
           IESELFG+  G+FTGA     +G+  QADGGTL LDEIGDMPL +QTRLLRVL + Q   
Sbjct: 205 IESELFGHEKGAFTGANTI-RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYR 263

Query: 456 IGG-EPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVALPAVRE-RSDKAQLLD 513
           +GG  P  VDVRI++ATH++L +RV++G FREDL++RLN + V LP +RE R D  +L  
Sbjct: 264 VGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLAR 323

Query: 514 FLLRQETQGQWID---IEPRARQALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPA 570
             L+   +   ++   + P    AL    WPGNVRQ+ N  R L  +     +   DLP 
Sbjct: 324 HFLQVAARELGVEAKLLHPETEAALTHLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPG 383

Query: 571 VIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAER 630
            +  S     V E    S  + +     L +   R+ RSG       ++  +E   + ER
Sbjct: 384 ELFEST----VAE--STSQMQPDSWATLLAQWADRALRSG------HQNLLSEAQPELER 431

Query: 631 QALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667
             L   L     H    A  LG  RNTL RKL++ G+
Sbjct: 432 TLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468