Pairwise Alignments

Query, 474 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

Subject, 468 a.a., Uncharacterized HTH-type transcriptional regulator YdcR from Escherichia coli ECRC101

 Score =  114 bits (286), Expect = 5e-30
 Identities = 98/435 (22%), Positives = 190/435 (43%), Gaps = 38/435 (8%)

Query: 28  YLMIADALEQDIESGRLAEGDRLPTLKDLAEALNVTPGTVGRAYDEAAKRGLVAGEVGRG 87
           Y  +A+ L + I SG    GDRLP+L+D      ++  TV  AY     +G +       
Sbjct: 4   YQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARPQSS 63

Query: 88  TFVRQLRQPLPAPSVPTPVAGESSQIDL--------------SIIKPNDAHMS------E 127
            +V    Q +  P VP         +D+              S++    A         +
Sbjct: 64  YYVAP--QAIKMPKVPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPLQ 121

Query: 128 WLGTAISELAASSDLGQVLDYVTEGGHTSHKQAGATWIQRWL---PDARWQQVVLTAGAQ 184
            L  ++++++ ++    V++ +  G     +     +  + +   PD    ++V+TAGA 
Sbjct: 122 QLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYALQGITISPD----EIVITAGAL 177

Query: 185 HGLLVAISSLSKSDDVVLCESLCYPGIISLAHSLGRRLRGVAMD-EHGLIPEALRAACLE 243
             L +++ ++++  D V+ E+ C+ G +     L  +   VA D + G+  +AL  A  E
Sbjct: 178 EALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQE 237

Query: 244 HRPSLLVCVTTHQNPTNSIMPPARRQAIAEIAREFDLFIVDDDIYGFLEPSPDYKPLAAY 303
           +       +T  QNP    + P ++  +  +  ++++ +++DD+Y  L    + KPL A 
Sbjct: 238 YPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGRE-KPLPAK 296

Query: 304 APERS---VYLTSLSKSVLPALRIGYLYAPPQTLSRLSSMVRSSVWMPSPLMAQLASNLI 360
           A +R    ++ +S SK ++P  RIG++ A           + S++   SP+   L   L 
Sbjct: 297 AWDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLS 356

Query: 361 NSGKADQLVRMQQQEAAARQH----MAREILGQYKIRSQPHSFHIWLELPEPWTSDEFAN 416
                  L R+++Q A  +Q     + R +  + KI      + +WLELPEP  + E + 
Sbjct: 357 TRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYFLWLELPEPLDAGELSL 416

Query: 417 LARDNGVTVVSGSQF 431
            A  + +++  G  F
Sbjct: 417 AALTHHISIAPGKMF 431