Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score = 1745 bits (4520), Expect = 0.0
 Identities = 875/1368 (63%), Positives = 1073/1368 (78%), Gaps = 15/1368 (1%)

Query: 2    AYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSVF 61
            AYSYTE+KRIRK F     V+++PYLL +Q D+Y  FLQAG         GL AAF + F
Sbjct: 6    AYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAF 65

Query: 62   PIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESS---NKAI 118
            PI+S++G   ++++ Y L +PAFDV+EC  RG+TFA  +R KV+LII+D+ESS   +K +
Sbjct: 66   PIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVV 125

Query: 119  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSA 178
            K++KEQEVYMGE+PLMT+ G+F+INGTERVIVSQLHRSPGVFF+HD+GKTHSSGKLL+SA
Sbjct: 126  KEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185

Query: 179  RIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISG 238
            R+IPYRGSWLDFEFDPKD ++ R+DRRRK+P ++LL+A+G + E +L  F+  + F +  
Sbjct: 186  RVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMD 245

Query: 239  EKLSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVL 298
                +E V +RLRGEVA  DI D++GKV+V + +R+TARH  +LE+ G   + VP ++++
Sbjct: 246  SGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFLV 305

Query: 299  GRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKI 358
            GR  A+ IV   +GEILA+ N E+T  LL K+  A V  ++ +YTN++D G +IS TL+I
Sbjct: 306  GRVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLRI 365

Query: 359  DTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTE 418
            D T ++  A V IYRMMRPGEPPT+DA + LF  LF++ + YDLS VGRMKFN ++GR E
Sbjct: 366  DETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRDE 425

Query: 419  IEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVER 478
              G  VL+ EDI+ V+K LVD+RNG G VDDIDHLGNRRVRCVGE+AENQ+R GL R+E+
Sbjct: 426  STGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEK 485

Query: 479  AVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSAL 538
            AVKERL  AE E LMP DLIN+KP++AA+KEFFG+SQLSQFMDQ NPLSEITHKRRVSAL
Sbjct: 486  AVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSAL 545

Query: 539  GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRV 598
            GPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLA YAR N+YGF+E+PYR 
Sbjct: 546  GPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRR 605

Query: 599  VKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLM 658
            V +  V+++I +LSAIEE  +VIAQA+AA++    L  +LV+ R   E  +   E +  M
Sbjct: 606  VVDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAERIQYM 665

Query: 659  DVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSG 718
            DVSP Q+VSVAASL+PFLEHDDANRALMG+NMQRQAVP LR +KP+VGTG+ER  A DSG
Sbjct: 666  DVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVSAVDSG 725

Query: 719  VCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSK 778
              V A RGG++D VDA+R+VVRV D E   GE GVDIYNL KY RSNQNT I+QRP+V +
Sbjct: 726  TVVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKR 785

Query: 779  GDKVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHI 838
            GDK+ +GD++ADG STD+GELALGQNM IAFM WNG+NFEDSI +SERVV EDR+T+IHI
Sbjct: 786  GDKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHI 845

Query: 839  QELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGET 898
            +EL  +ARDTKLG EEIT DIPN+ E  LN+LDE+GI+YVGAEV  GD LVGKVTPKGET
Sbjct: 846  EELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGET 905

Query: 899  QLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQL 958
             LTPEEKLLRAIFGEKASDVKDTSLRV  G++GTVIDVQVFTR+G+ RD RA  I   +L
Sbjct: 906  TLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDEL 965

Query: 959  DEIRKDLNEEFRIVEGATFERLRSALNGQVVDGGAG-LKKGTVITDEVLDGLEHGQWFKL 1017
               R DLN++ RIVE   F+R+   L G+V +GG   L KGT +    L  +E   WF +
Sbjct: 966  KRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKFHWFDI 1025

Query: 1018 RMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRI 1077
            R AED +  QLE  +  +   R   D  FE+K++KL QGD+L  GVLK+VKVYLA++RR+
Sbjct: 1026 RPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRL 1085

Query: 1078 QPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLA 1137
            QPGDKMAGRHGNKGVVS I+PVEDMPH A+GTP D+ LNPLGVPSRMNVGQ+LE HLG A
Sbjct: 1086 QPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVHLGWA 1145

Query: 1138 AKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVPM 1197
             KG+G++I  +L+++ K AELR F+ ++YN   GR E L++ +D E+LA+A NL+ G   
Sbjct: 1146 GKGIGQRIGDLLQQEAKVAELRKFMEQLYNG-SGRPEELEQLSDTELLAMAANLQSGATF 1204

Query: 1198 ATPVFDGAKEREIKAMLKLA---------DLPES-GQMVLFDGRTGNKFERPVTVGYMYM 1247
            ATPVFDGA E EI+ MLKLA          L E+  Q  LFDGRTG++FERPVTVGYM+ 
Sbjct: 1205 ATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGYMHF 1264

Query: 1248 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1307
            LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQEMLT
Sbjct: 1265 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT 1324

Query: 1308 VKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE 1355
            VKSDDV GRTK+Y++IV G+H +E GMPESFNVL+KEIRSLG+DI+LE
Sbjct: 1325 VKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELE 1372