Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta RpoB from Escherichia coli ECRC62

 Score = 1963 bits (5085), Expect = 0.0
 Identities = 976/1360 (71%), Positives = 1164/1360 (85%), Gaps = 21/1360 (1%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60
            M YSYTEKKRIRKDF K P V+DVPYLL+IQLDS+++F++    +D     GL AAF+SV
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE----QDPEGQYGLEAAFRSV 56

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD 120
            FPI SYSGN+ L+YV YRLGEP FDV+EC +RGVT++ PLRVK+RL+I+++E+    +KD
Sbjct: 57   FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            IKEQEVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARI
Sbjct: 117  IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK 240
            IPYRGSWLDFEFDPKD +FVRIDRRRKLPA+++LRAL Y+TE++L+ F+   +F I   K
Sbjct: 177  IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236

Query: 241  LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR 300
            L +ELVP+RLRGE A  DI +  GKV VE+GRRITARHI QLEK  VK ++VP+EY+ G+
Sbjct: 237  LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295

Query: 301  TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT 360
              AK  +  +TGE++   N E++ +LL K++++   RIETL+TND+D GP+IS+TL++D 
Sbjct: 296  VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE 420
            T+++L ALVEIYRMMRPGEPPT++AAE+LF NLFFS +RYDLSAVGRMKFNR + R EIE
Sbjct: 356  TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415

Query: 421  GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
            GSG+LSK+DI++V+K L+DIRNGKG VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 416  GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP 540
            KERLS+ + + LMPQD+INAKP++AAVKEFFGSSQLSQFMDQNNPLSEITHKRR+SALGP
Sbjct: 476  KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V 
Sbjct: 536  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595

Query: 601  EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV 660
            +GVV+D+I +LSAIEE ++VIAQA++ ++++   +++LV  R   E ++ + + V  MDV
Sbjct: 596  DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            S +QVVSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRADKPLVGTGMER VA DSGV 
Sbjct: 656  STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
             VA+RGGV+  VDASRIV++V +DE+  GEAG+DIYNLTKYTRSNQNTCINQ P VS G+
Sbjct: 716  AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775

Query: 781  KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
             V+RGD++ADGPSTD+GELALGQNMR+AFM WNG+NFEDSI +SERVVQEDRFTTIHIQE
Sbjct: 776  PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
            L CV+RDTKLGPEEITADIPNVGEAAL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 836  LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE 960
            TPEEKLLRAIFGEKASDVKD+SLRVP G  GTVIDVQVFTRDGVE+D RAL IE+MQL +
Sbjct: 896  TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955

Query: 961  IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA 1020
             +KDL+EE +I+E   F R+R+ L    V GG        +  E LD L   +W +L + 
Sbjct: 956  AKKDLSEELQILEAGLFSRIRAVL----VAGG--------VEAEKLDKLPRDRWLELGLT 1003

Query: 1021 EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080
            ++    QLE+  +   + +   + K E K+RK+ QGDDLAPGVLKIVKVYLA++RRIQPG
Sbjct: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063

Query: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140
            DKMAGRHGNKGV+S I P+EDMP+D NGTPVD+VLNPLGVPSRMN+GQILETHLG+AAKG
Sbjct: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123

Query: 1141 LGEKIDRMLEEQRKAAELRVFLTEVYNEIGG---RQENLDEFTDEEILALANNLKKGVPM 1197
            +G+KI+ ML++Q++ A+LR F+   Y ++G    ++ +L  F+DEE++ LA NL+KG+P+
Sbjct: 1124 IGDKINAMLKQQQEVAKLREFIQRAY-DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182

Query: 1198 ATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDK 1257
            ATPVFDGAKE EIK +LKL DLP SGQ+ L+DGRTG +FERPVTVGYMYMLKLNHLVDDK
Sbjct: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242

Query: 1258 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1317
            MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302

Query: 1318 KMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357
            KMYKNIVDG+H+MEPGMPESFNVL+KEIRSLGI+I+LE E
Sbjct: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342