Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Dickeya dianthicola ME23

 Score = 1972 bits (5110), Expect = 0.0
 Identities = 982/1360 (72%), Positives = 1162/1360 (85%), Gaps = 21/1360 (1%)

Query: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV 60
            M YSYTEKKRIRKDF K P V+D+PYLL+IQLDS+++F++    +D     GL AAF+SV
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIE----QDPEGQYGLEAAFRSV 56

Query: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD 120
            FPI SYSGN+ L+YV YRLGEP FDV+EC +RGVTF+ PLRVK+RL+I+++E+    +KD
Sbjct: 57   FPIASYSGNSELQYVSYRLGEPVFDVQECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKD 116

Query: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180
            IKEQEVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARI
Sbjct: 117  IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176

Query: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK 240
            IPYRGSWLDFEFDPKD +FVRIDRRRKLPA+++LRAL YSTEE+L+ F+   V+ I   K
Sbjct: 177  IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILDLFFDKVVYEIHNNK 236

Query: 241  LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR 300
            L +ELVP+RLRGE A  DI  + GKV VE+GRRITARHI QLEK G+++++VP+EY+ G+
Sbjct: 237  LQMELVPERLRGETASFDIEAD-GKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIAGK 295

Query: 301  TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT 360
              AK  V  +TGE++A  N E++ +LL K+++A   R++TL+TND+D GP++S+TL++D 
Sbjct: 296  VLAKDYVDESTGEVIAMANMELSLDLLAKLSQAGHKRLDTLFTNDLDHGPYMSETLRVDP 355

Query: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE 420
            T+++L ALVEIYRMMRPGEPPT++AAETLF NLFFS +RYDLSAVGRMKFNR + R EIE
Sbjct: 356  TNDRLSALVEIYRMMRPGEPPTREAAETLFGNLFFSEDRYDLSAVGRMKFNRSLLREEIE 415

Query: 421  GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480
            GSG+LSK DI++V+K L+DIRNGKG VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 416  GSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475

Query: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP 540
            KERLS+ + + LMPQD+INAKP++AAVKEFFGSSQLSQFMDQNNPLSEITHKRR+SALGP
Sbjct: 476  KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535

Query: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600
            GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V+
Sbjct: 536  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVR 595

Query: 601  EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV 660
            +GVV+D+I +LSAIEE ++VIAQA+  ++D+   I+ELV  R   E ++ + + V  MDV
Sbjct: 596  DGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIEELVTCRSKGESSLFSRDQVDYMDV 655

Query: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720
            S +QVVSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRADKPLVGTGMER VA DSGV 
Sbjct: 656  STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715

Query: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780
             VA+RGG +  VDASRIV++V +DE+  GEAG+DIYNLTKYTRSNQNTCINQ P VS G+
Sbjct: 716  AVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775

Query: 781  KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
             V+RGD++ADGPSTD+GELALGQNMR+AFM WNG+NFEDSI +SERVVQEDRFTTIHIQE
Sbjct: 776  PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
            L CV+RDTKLGPEEITADIPNVGEAAL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 836  LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE 960
            TPEEKLLRAIFGEKASDVKD+SLRVP G  GT+IDVQVFTRDGVE+D RAL IE+MQL +
Sbjct: 896  TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQ 955

Query: 961  IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA 1020
             +KDL EE +I+E   F R+   L    V GG    K        LD L   +W +L + 
Sbjct: 956  AKKDLTEELQILEAGLFARIHDVL----VAGGVEADK--------LDKLPRERWLELGLT 1003

Query: 1021 EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080
            ++    QLE+  +   + +   + K E K+RK+ QGDDLAPGVLKIVKVYLA++R+IQPG
Sbjct: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPG 1063

Query: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140
            DKMAGRHGNKGV+S I P+EDMP+D NGTPVD+VLNPLGVPSRMN+GQILETHLG+AAKG
Sbjct: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123

Query: 1141 LGEKIDRMLEEQRKAAELRVFLTEVYNEIGG---RQENLDEFTDEEILALANNLKKGVPM 1197
            +G+KI+ ML++Q++ A+LR F+   Y ++G    ++ +L+ F+DEE+L LA NLKKG+P+
Sbjct: 1124 IGDKINAMLKQQQEVAKLREFIQRAY-DLGNDVRQKVDLNTFSDEEVLRLAENLKKGMPI 1182

Query: 1198 ATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDK 1257
            ATPVFDGAKE EIK +LKL DLP SGQ+ LFDGRTG +FERPVTVGYMYMLKLNHLVDDK
Sbjct: 1183 ATPVFDGAKENEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242

Query: 1258 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1317
            MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302

Query: 1318 KMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357
            KMYKNIVDGDHRMEPGMPESFNVL+KEIRSLGI+I+LE E
Sbjct: 1303 KMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE 1342