Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 1291 a.a., DNA-directed RNA polymerase, beta subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 1117 bits (2888), Expect = 0.0
 Identities = 621/1390 (44%), Positives = 881/1390 (63%), Gaps = 153/1390 (11%)

Query: 12   RKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSVFPIISYSGNAA 71
            RK FS +  V D P  L IQL S+++F Q     +  R  GL   F   FPI     N  
Sbjct: 9    RKSFSSIKVVKDYPDFLDIQLQSFKDFFQLDTPAEKRRQDGLFKVFSENFPISDSRENFT 68

Query: 72   LEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKDIKEQEVYMGEI 131
            LE++ Y +  P + V EC+ RG+T++VPL+ K+RL+  D++  N+  + I EQEV++G +
Sbjct: 69   LEFIDYTVDPPKYSVGECIDRGLTYSVPLKAKLRLLCSDED--NEDFETI-EQEVFLGNL 125

Query: 132  PLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFE 191
            P MTE G+FVING ERVIVSQLHRSPGVFF   +   H++G  LYSARIIP++GSW++F 
Sbjct: 126  PYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWIEFA 182

Query: 192  FDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEKLSLELVPQRLR 251
             D  + ++  IDR++K P + LLRA+GY +++ +      ++F +S E            
Sbjct: 183  TDINNVMYAYIDRKKKFPVTTLLRAIGYGSDKAI-----LDLFGLSEE------------ 225

Query: 252  GEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGRTTAKAIVHPAT 311
                 ++ +    K IV  GR++ AR            L   +E  +   T + +V    
Sbjct: 226  -----IEANKSNLKKIV--GRKLAAR-----------VLKTWVEDFVDEDTGE-VVSIDR 266

Query: 312  GEILAECNTEMTTE---LLIKVAKAQVVRIETLYTNDIDCGPF--ISDTLKIDTTSNQLE 366
             E+L E ++ +T E   L++      V+    L+ +D++   +  I +TL+ D ++++ E
Sbjct: 267  NEVLLERDSVLTDEDIELILDSGAKSVI----LHRDDVNIADYSIIYNTLQKDNSNSEKE 322

Query: 367  ALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIEGSGVLS 426
            A+  IYR +R  E P +  A  + + LFFS +RYDL  VGR + N+++G        VL+
Sbjct: 323  AVEVIYRQLRNTEAPDEATAREVIHGLFFSDKRYDLGEVGRYRINKKLGLDIEAEKIVLT 382

Query: 427  KEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSM 486
             EDI+ ++K L+ + N K +VDDIDHL NRRVR VGE   +QF VGL R+ R ++ER+++
Sbjct: 383  TEDIINIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYSQFGVGLARMARTIRERMNV 442

Query: 487  AESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRE 546
             ++E   P DLINA+ +++ +  FFG++QLSQFMDQ NPL+E+THKRR+SALGPGGL+RE
Sbjct: 443  RDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAELTHKRRLSALGPGGLSRE 502

Query: 547  RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEG---V 603
            RAGFEVRDVH THYGR+C IETPEGPNIGLI+SL  +A+ N  GFLE+PYR VKEG   +
Sbjct: 503  RAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNAMGFLETPYRKVKEGKAGM 562

Query: 604  VSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDVSPK 663
             ++DIVFL+A EE ++ IAQA+A +      +++ V  R+  +F V  P++++ MDV+P 
Sbjct: 563  EAEDIVFLTAEEEDNNNIAQANAPLETDGSFVNDRVKARYEGDFPVLEPKEISYMDVAPN 622

Query: 664  QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVA 723
            Q+VSVAASLIPFLEHDDANRALMGSNMQRQAVP L+A+ P+VGTG+E   A DS   ++A
Sbjct: 623  QIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAESPIVGTGLEAKAAVDSRSLIIA 682

Query: 724  RRGGVIDSVDASRIVVR--VADDEVETGEAG-VDIYNLTKYTRSNQNTCINQRPLVSKGD 780
               GV+D VDA +IV++  ++DDE+    +     Y+L K+ R+NQ+T IN  PLV KG 
Sbjct: 683  EADGVVDFVDAKKIVIKYDLSDDELLVNFSDEYKSYDLIKFRRTNQDTTINLTPLVLKGQ 742

Query: 781  KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840
            +V +G ++ +G ST+ GELALG+N+++A+M W G+NFED+I +SERVV+ED FT+IH++E
Sbjct: 743  RVTKGQVLVEGYSTNQGELALGKNLKVAYMPWQGYNFEDAIVISERVVREDIFTSIHVEE 802

Query: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900
                 RDTK G EE+T++IPNV E A+  LDE GI+ +GAE+  GDI++GK+TPKGET  
Sbjct: 803  FQLEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRIGAELKEGDIIIGKITPKGETDP 862

Query: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALA---IEKMQ 957
            TPEEKLLRAIFG+KA DVKD SL+      G VI+ ++F+R   +++ RA A   +EK++
Sbjct: 863  TPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIETKLFSRPKKDKELRAKAKAEVEKLK 922

Query: 958  -------LDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGL--------------- 995
                   L    K +N+   I++G T   ++     +++  G                  
Sbjct: 923  QAYTKELLGVRAKMINKLVSILDGMTSLGVKHKFGDEIISKGVKFNHQNIENNLFPAKNP 982

Query: 996  ----------KKGTVITDEVLDGLEHGQWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDK 1045
                      ++  +I+D +LD      W +    ++  N  +++  +   + R  +  +
Sbjct: 983  YRDESNYNVPEEANLISDIILD-----DWTE----DEHANSLIQQLVKNYTNTRNEISGR 1033

Query: 1046 FEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHD 1105
            F+  +  L+ GD+L  G++++ KVY+A +R+++ GDKMAGRHGNKG+V+ I+  EDMP  
Sbjct: 1034 FKRDRFTLEVGDELPAGIVRLAKVYVAKKRKLKVGDKMAGRHGNKGIVAKIVRDEDMPFL 1093

Query: 1106 ANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEV 1165
             +GTP+D+VLNPLGVPSRMN+GQI ET L  A    GEK+++                  
Sbjct: 1094 EDGTPMDIVLNPLGVPSRMNIGQIFETVLAWA----GEKMNK------------------ 1131

Query: 1166 YNEIGGRQENLDEFTDEEILALANNLKKGVPMATPVFDGAKEREIKAMLKLADLPESGQM 1225
                                            ATP+FDGA   E+ A L  A LP  G+ 
Sbjct: 1132 ------------------------------KYATPIFDGASTEEVAAELDAAGLPSFGRT 1161

Query: 1226 VLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1285
             LFDG TG +F++PVTVG  YMLKL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRF
Sbjct: 1162 YLFDGLTGKQFDQPVTVGIAYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF 1221

Query: 1286 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEI 1345
            GEMEVWALEA+GA++ LQE+LTVKSDDV GR K Y++IV G++  +P +PESFNVL+ E+
Sbjct: 1222 GEMEVWALEAFGASHVLQEILTVKSDDVIGRAKAYESIVKGENLPKPNIPESFNVLVHEL 1281

Query: 1346 RSLGIDIDLE 1355
            R L ++I L+
Sbjct: 1282 RGLALEITLD 1291