Pairwise Alignments

Query, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

Subject, 1371 a.a., DNA-directed RNA polymerase subunit beta from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 1582 bits (4097), Expect = 0.0
 Identities = 799/1358 (58%), Positives = 1042/1358 (76%), Gaps = 11/1358 (0%)

Query: 2    AYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSVF 61
            A S+T KKRIRK F ++P+ + +P L+ +Q  SY +FLQ        ++ G+ A FKSVF
Sbjct: 17   ATSFTGKKRIRKSFGRIPEAIAMPNLIEVQRASYEQFLQREVRPGVRKEQGIEAVFKSVF 76

Query: 62   PIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIF--DKESSNKAIK 119
            PI  ++  A LEYV Y   EP +DV+EC+ R +T+A PL+VK+RLI+F  D+E+  +++K
Sbjct: 77   PIKDFNERAILEYVSYEFEEPKYDVEECIQRDMTYAAPLKVKLRLIVFETDEETGARSVK 136

Query: 120  DIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 179
            DIKEQ+VYMG+IPLMT+ GTF++NGTERVIVSQ+HRSPGVFFDHD+GKTHSSGKLL++AR
Sbjct: 137  DIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAAR 196

Query: 180  IIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGE 239
            +IPYRGSWLDFEFD KD V+VRIDRRRKLPA+  L  LG   EE+L TFY T  +   GE
Sbjct: 197  VIPYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLMGLGMDGEEILKTFYETVPYEKRGE 256

Query: 240  KLSLELVPQRLRGEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVL 298
                    +R RG     D+ D +TG+V+ + G++I+AR   +L +     L +  + ++
Sbjct: 257  GWVTPYKAERWRGVKPEFDLIDADTGEVVAQAGQKISARAAKKLGET-TTSLSLAADALV 315

Query: 299  GRTTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKI 358
             +  A   V+  TGEI AE   E+    +  + +     IE L  + +  G ++ +TL++
Sbjct: 316  TKYLANDAVNFETGEIFAEAGDELDAPTIEVLEQNGFTTIEVLDIDHVTVGAYMRNTLRV 375

Query: 359  DTTSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTE 418
            D   N+ +AL ++YR+MRPGEPPT +AAE +FN+LFF +ERYDLSAVGR+K N R+   E
Sbjct: 376  DKNDNREDALFDVYRVMRPGEPPTPEAAEAMFNSLFFDSERYDLSAVGRVKMNMRLESPE 435

Query: 419  IEGS-GVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVE 477
            +     VL KED+++VL+ LV +++G+G +DDID+LGNRRVR VGE+ ENQ+RVGL+R+E
Sbjct: 436  VSDEIRVLRKEDVLKVLQILVGLKDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRME 495

Query: 478  RAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSA 537
            RA+KER+S  + + +MP DLINAKP AAAV+EFFGSSQLSQFMDQ NPLSEITHKRR+SA
Sbjct: 496  RAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA 555

Query: 538  LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYR 597
            LGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +AR N+YGF+ESPYR
Sbjct: 556  LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYR 615

Query: 598  VVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTL 657
             VK+G    ++V++SA+EE+ + IAQA+  + +  Q++++LV  R   E  +   + V +
Sbjct: 616  RVKDGQAQGEVVYISAMEESKYTIAQANIELKNG-QIVEDLVPGRINGESQLLNKDAVDM 674

Query: 658  MDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDS 717
            MDVSPKQVVSVAA+LIPFLE+DDANRALMG+NMQRQAVP +++D PLVGTGME  VA DS
Sbjct: 675  MDVSPKQVVSVAAALIPFLENDDANRALMGANMQRQAVPLVQSDAPLVGTGMEAVVAVDS 734

Query: 718  GVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVS 777
            G  VVARR GV++ +D +RIVVR   D V+   +GVDIY L+K+ RSNQ+TCINQRP+V 
Sbjct: 735  GAVVVARRDGVVEQIDGTRIVVRATGD-VDAARSGVDIYRLSKFQRSNQSTCINQRPIVR 793

Query: 778  KGDKVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIH 837
             GD+V+ GD++ADGPSTD+GELALG+N  +AFM WNG+NFEDSI +SER+V++D FT+IH
Sbjct: 794  VGDQVKGGDVIADGPSTDLGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSIH 853

Query: 838  IQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGE 897
            ++E    ARDTKLGPEEIT DIPNVGE AL  LDEAGIV +GAEV  GDILVGKVTPKGE
Sbjct: 854  LEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGE 913

Query: 898  TQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQ 957
            + +TPEEKLLRAIFGEKASDV+DTSLR+P G  GT++DV+VF R GV++D RA+AIE+ +
Sbjct: 914  SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIERAE 973

Query: 958  LDEIRKDLNEEFRIVEGATFERLRSALNGQ-VVDGGAGLKKGTVITDEVLDGLEHGQWFK 1016
            ++ + KD ++E +I+E   + RL+  + G+  V G  G+ +G  +TDE L  +  G W++
Sbjct: 974  IERLGKDRDDELKILERNVYGRLKPLIVGKNAVSGPKGIGRGE-LTDEKLAEVSRGLWWQ 1032

Query: 1017 LRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRR 1076
            + + ++    +LE  ++   D R+ LD +FEDK  KLQ+GD+L PGV+K+VKV++A++R+
Sbjct: 1033 IALDDEKAMGELEAMKRQFEDARKQLDRRFEDKVEKLQRGDELPPGVMKMVKVFVAVKRK 1092

Query: 1077 IQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGL 1136
            +QPGDKMAGRHGNKGV+S I+P+EDMPH  +GT VDVVLNPLGVPSRMN+GQI ETHLG 
Sbjct: 1093 LQPGDKMAGRHGNKGVISKILPIEDMPHLEDGTHVDVVLNPLGVPSRMNIGQIFETHLGW 1152

Query: 1137 AAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVP 1196
            AA GLG++I  +LE  +   + +  +  +   I G +  L +  +EE++ LA NL KGVP
Sbjct: 1153 AAAGLGKQISGLLEAWQAGGQKQALIDRL-THIYGEETPLPQ-DEEELIELAKNLSKGVP 1210

Query: 1197 MATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDD 1256
             ATPVFDGA   +I+ +L+ A L +S Q +L+DG+TG +F+RPVTVGY+YMLKL+HLVDD
Sbjct: 1211 FATPVFDGAHIGDIERLLEEAGLNKSAQSILYDGQTGEQFKRPVTVGYIYMLKLHHLVDD 1270

Query: 1257 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1316
            K+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GR
Sbjct: 1271 KIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGR 1330

Query: 1317 TKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDL 1354
            TK+Y+ IV GD   E G+PESFNVLIKE+RSLG++++L
Sbjct: 1331 TKVYEAIVRGDDSFEAGIPESFNVLIKEMRSLGLNVEL 1368