Pairwise Alignments

Query, 177 a.a., transcription antipausing factor NusG from Pseudomonas putida KT2440

Subject, 188 a.a., transcription antitermination protein from Agrobacterium fabrum C58

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 27/187 (14%)

Query: 5   WYVVHAYSGYEKHVMRSLIERVKLAGMEDGFGEILVPTEEVVE--MRNGQKRKSERKFFP 62
           W+VV      EK V  +L    + AG++     + +P E + E  +R        R   P
Sbjct: 15  WFVVETKHKAEKAVEDAL----RKAGVK-----VFLPLETIGETVVRGRIIPAVSRPLLP 65

Query: 63  GYVLVQMEMNEGTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAILRRVADGSDKPKPKT 122
           GYVLV +  +      +     V GF+GG    P  ++D+E     R  A G D+  P  
Sbjct: 66  GYVLVNIVYSPAAVCGIARLEGVAGFVGGMVH-PHRVSDEEMN---RFKAFGDDETAPDV 121

Query: 123 L----FEPGEVVRVIDGPFADFNGSVEEVNYEK--------SRLQVAVLIFGRSTPVELE 170
                F+ G+ VR + GPFA F G++ ++  ++        +   VAV +FG+ + +E  
Sbjct: 122 KHCEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAP 181

Query: 171 FSQVEKV 177
            + +E++
Sbjct: 182 LALLEQL 188