Pairwise Alignments

Query, 344 a.a., Polyamine ABC transporter, periplasmic polyamine-binding protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Escherichia coli ECRC101

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 92/357 (25%), Positives = 150/357 (42%), Gaps = 35/357 (9%)

Query: 2   RKQLKLTALALGLFTAGQAMAADLTVISFGGANKAAQVKAFYEPWEKAGNGKIVAGEYNG 61
           R  L   ALALG+     A A D   + F    +        E + K    K++   Y  
Sbjct: 6   RHLLAAGALALGM---SAAHADDNNTLYFYNWTEYVP-PGLLEQFTKETGIKVIYSTYES 61

Query: 62  EMAKVKAMVDTKSVSWNLVEVESPELARGCDEGMFEELDPALFGNEADYVPGAIQP---- 117
                  +   K  +++LV   +  + +   EGM +++D +   N ++  P  +      
Sbjct: 62  NETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFSNLDPDMLNKPFDP 121

Query: 118 ---CGVGFFVWSTVMAYNADKLKT-APTSWADFWDTKQFPGKRGLRKGAKYTMEFALMAD 173
                + +   +T +  N D +   + TSWAD W   ++ G   L   A+   + AL   
Sbjct: 122 NNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKP-EYKGSLLLTDDAREVFQMALRKL 180

Query: 174 GVA-----PKDVYKVLATKEGQDRAFKKLDELKPSIQWWEAGAQPPQFLASGDVVMSSAY 228
           G +     PK++          + A+ +L +L P++  + +   P      G+V +   +
Sbjct: 181 GYSGNTTDPKEI----------EAAYNELKKLMPNVAAFNSD-NPANPYMEGEVNLGMIW 229

Query: 229 NGR-IAAVQKESNLKVVW--NGGIYDFDAWAIPKGAKNVEEAKKFIAYSVKPEQQKIYSE 285
           NG    A Q  + + VVW   GGI+  D+ AIP  AKN E A K I + ++P+  K  +E
Sbjct: 230 NGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAE 289

Query: 286 NIAYGPANSKAVSLLSDEVKKDMPTTP--ENIAN-QVQIDVAFWADNSEQLEQRFNA 339
            I Y   N  A  LLS EV  D   +P  E I N + Q DV   +   E+  Q+  A
Sbjct: 290 TIGYPTPNLAARKLLSPEVANDKTLSPDAETIKNGEWQNDVGAASSIYEEYYQKLKA 346