Pairwise Alignments

Query, 344 a.a., Polyamine ABC transporter, periplasmic polyamine-binding protein from Pseudomonas putida KT2440

Subject, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

 Score = 73.6 bits (179), Expect = 8e-18
 Identities = 88/340 (25%), Positives = 140/340 (41%), Gaps = 39/340 (11%)

Query: 3   KQLKLT-ALALGLFTAGQAMAADLTVISFGGANKAAQVKAFYEPWEKAGNGKIVAGEYNG 61
           + L+LT AL   L  AG AMA +  V  +  ++    V    E + K    K+V   Y+G
Sbjct: 4   RSLRLTLALTTALVAAGSAMAQEKVVHVYNWSDYIDPV--ILEDFTKETGIKVVYDVYDG 61

Query: 62  -EMAKVKAMVDTKSVSWNLVEVESPELARGCDEGMFEELD-----------PALFGNEAD 109
            E+ + K +    S  +++V   SP LAR    G++++LD           P +    A 
Sbjct: 62  NEVLETKLLAG--SSGYDVVAPTSPFLARQIKAGVYQKLDKSKLPNLKNAWPDITERLAK 119

Query: 110 YVPGAIQPCGVGFFVWSTVMAYNADKLKTAPTSW-ADFWDTKQFPGKRGLRKGAKYTM-- 166
           Y PG      V +   +T + YN  K+K A      D WD    P      K     +  
Sbjct: 120 YDPG--NEYAVNYMWGTTGIGYNVAKVKAALGDVPVDSWDVLFKPENAEKLKSCGINILD 177

Query: 167 ----EFALMADGVAPKDVYKVLATKEGQDRAFKKLDELKPSIQWWEAGAQPPQFLASGDV 222
                FA+  + +      K  A  E     + K+   +P ++ + +       LA+GD 
Sbjct: 178 ASDETFAIAMNYLGKNPDSKETADLEAGGEVYSKI---RPYVKTFNSSPYIND-LANGDT 233

Query: 223 VMSSAYNGRIAAVQK---------ESNLKVVWNGGIYDFDAWAIPKGAKNVEEAKKFIAY 273
            +S  ++G I   +          E N  +   G     D++AIP  AKNV+EA  FI Y
Sbjct: 234 CISIGWSGDILQAKTRAEEAKNGVEVNYVIPKEGTYIWMDSFAIPADAKNVDEAHAFINY 293

Query: 274 SVKPEQQKIYSENIAYGPANSKAVSLLSDEVKKDMPTTPE 313
            +KPE     S+ + Y   N  + +L+   V K+    P+
Sbjct: 294 MMKPEVAAKASDYVQYANGNLPSQALMDPSVAKNPGVYPD 333