Pairwise Alignments

Query, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

Subject, 292 a.a., Ribosomal RNA small subunit methyltransferase A from Xanthobacter sp. DMC5

 Score =  153 bits (387), Expect = 4e-42
 Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 12/263 (4%)

Query: 9   ARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDV-VELDK 67
           A+K  GQNFL D  +  RI RA        ++E+GPG G LT  LL  GA+  + +E D+
Sbjct: 21  AQKSLGQNFLLDLNLTGRIARASGPLEDVTVVEVGPGPGGLTRALLALGAKRVIAIERDR 80

Query: 68  DLVPILQHKFADR-SNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSH 126
             +  L    A       + +GDALK D   L +     +VV NLPYNI+T L+   LS 
Sbjct: 81  RCMDALAEVAAHYPGRLEVIEGDALKVDVRPL-IGEGEARVVANLPYNIATVLLVGWLST 139

Query: 127 ---AGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPK 183
                    +  M QKEV ER+ A PG   +GRL+++  +  +    F+V P AF PPPK
Sbjct: 140 DPWPPWFSSLTLMFQKEVAERIVAEPGSKAYGRLAVLAGWRTKGRIAFDVAPSAFVPPPK 199

Query: 184 VDSAIVRLVPH-EVLPFPAKDHLLLERVVREAFNQRRKTLRNTMK--GLLDSAAIEAAGV 240
           V S+++ LVP  E LP        LE+V   AF QRRK LR ++K  G+   A + AAGV
Sbjct: 200 VTSSVIHLVPRAEPLPCALS---ALEKVTESAFGQRRKMLRQSLKTLGVDAQALLAAAGV 256

Query: 241 DGSLRPEQLDLAAFVRLADQLAD 263
           + + R E++D+A FVRLA+  ++
Sbjct: 257 EETARAEEIDVAGFVRLANAFSE 279