Pairwise Alignments

Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1059 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  477 bits (1228), Expect = e-138
 Identities = 257/610 (42%), Positives = 375/610 (61%), Gaps = 6/610 (0%)

Query: 619  RKRLVDQLNRDGFVRDFTCHIRRSDG-QIRLCELSARPLPITGVDCMLTIARDITERHLM 677
            R R   QL   G V +F   +R   G +     LSAR L   G D +LT    I    LM
Sbjct: 440  RSRFFQQLADRGAVDEF--EVRWLGGAEPSWAVLSARRLVYQGQDALLTAFTPINHLKLM 497

Query: 678  QEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEALGQTPRLLASGQHDS 737
            +++L L A VFE ++EG+LI + + RI   NRA   +TG+   + +G+ P  L S    S
Sbjct: 498  EQRLMLWAKVFEASSEGILIINGEHRILTANRALCRLTGHDLGDLVGEPPEQLMSD--GS 555

Query: 738  AFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSDREITHFVAVFADISSIK 797
              +  +W  L   G WQGE+  +R+NG+ YP+WL  S VR+    I+H++    D+S  K
Sbjct: 556  LHFADLWPVLDQRGTWQGEVTVRRRNGDSYPAWLVASVVRDGPERISHYIFTSIDVSDRK 615

Query: 798  HAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLG 857
             ++A++ + AHHD LT LPNR+L   RL   L  AQ   ++  VLF+DLDRFK+INDSLG
Sbjct: 616  RSEARIRFLAHHDVLTELPNRSLCIERLGLALQQAQRKGQRVGVLFIDLDRFKNINDSLG 675

Query: 858  HPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSD-ASTIANKLLACFNA 916
            H VGD LL+ +A R+ + VR  DTV+RLGGDEF+++L  +    +  S +  +L++    
Sbjct: 676  HHVGDALLRSVAARMSQAVRPGDTVSRLGGDEFVVVLNNVADGQEILSLVERRLISLIRQ 735

Query: 917  PFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTAQA 976
            P      E   S S+GI++YP D  D+  L+R+AD AMY+SKA GR+    +T ++  +A
Sbjct: 736  PHDIDGAEIHVSCSVGIAVYPDDAQDIDALMRHADVAMYQSKASGRDTARFFTPEMNERA 795

Query: 977  SERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEALIRWSHPTFGEVPPEHFIHLA 1036
             +R+ LE  LR A+ER+E+SL +QP++   +  L+  EAL+RW     G+V P  FI +A
Sbjct: 796  QQRLQLESSLRHAIERDELSLHYQPRIDAHSGELICVEALLRWQSAELGQVRPAQFIPIA 855

Query: 1037 EENGTILQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAGAQLRHPHLARRIEQLLKHHQ 1096
            EE+G I+ +G WV+EQAC Q  AW++       ++IN++  QLR   L   +   +  + 
Sbjct: 856  EESGQIVAIGAWVIEQACAQHAAWRRDGLGAIRVAINMSALQLRDGGLLEVLRGAIALYG 915

Query: 1097 LKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILK 1156
            +  GDL++E+TE+ +M  AE++L  L+ LK LGV L+IDDFGTGYSSL+YL R P+D LK
Sbjct: 916  VSPGDLEIELTESTLMDAAEQSLVQLHALKSLGVMLSIDDFGTGYSSLNYLNRFPIDKLK 975

Query: 1157 IDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQAQQRFLAAEGCEQIQGYIV 1216
            ID+SFI  +  DP D AIARAII LG ++ L ++AEGVE + +   L A  C+++QGY++
Sbjct: 976  IDRSFIHKMLGDPTDMAIARAIIGLGHTLGLRVVAEGVERREEADTLRAARCDELQGYLI 1035

Query: 1217 SLPLPPEEFA 1226
            S P+P  + A
Sbjct: 1036 SRPMPAGKLA 1045



 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 527 SAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLE 586
           SA      G  AL+ A   I+ LK  +Q+L      +AK F AS +G+L+    +  +L 
Sbjct: 472 SARRLVYQGQDALLTAFTPINHLKLMEQRLML----WAKVFEASSEGILIIN-GEHRILT 526

Query: 587 VNEGFCRLTGYDLNPTIDQ 605
            N   CRLTG+DL   + +
Sbjct: 527 ANRALCRLTGHDLGDLVGE 545