Pairwise Alignments
Query, 1247 a.a., Sensory box protein from Pseudomonas putida KT2440
Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440
Score = 491 bits (1263), Expect = e-142
Identities = 309/873 (35%), Positives = 477/873 (54%), Gaps = 55/873 (6%)
Query: 398 LWVRNIVSMIEHGHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSD 457
LW+ + + +Q V+ + DI+ K+ E +L E ++ V + PD L +
Sbjct: 409 LWLMARLPLQRRDYQAVILSIS-DITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPS 467
Query: 458 GCLLEVNEAFEEQIGLPPDQV--IGRTATDLDLWGVEGSGPLLLERLHQGGIRN----LE 511
++ N + +G ++ +G +L L + + L R + + +
Sbjct: 468 QRMIFSNRHLGQTLGYDRTELAQMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLHCQ 527
Query: 512 MSFRRSNG--QLFTGLTSAETFELDGTPALVVAV-RDISQLKETQQQLQTSEEKFAKAFH 568
+ FR +G + + T +G ++ V +D++ E Q L+ SE+++
Sbjct: 528 LRFRHRDGSWRCYDIREQVLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAE 587
Query: 569 ASPDGLLLSRQSDGLLLEVNEGFCRLTGYDL-------------NPT--------IDQTS 607
+ D ++ S + L V+ + GY NP +++ S
Sbjct: 588 SISD-VIFSTDNQLKLNYVSPSVQSVLGYQADWIFANGWQSIVANPAQLTGIYSLMERVS 646
Query: 608 LDLGIWVDLNERKRLVDQLNRDGFVRDFTCHIRRSDG-----QIRLCELSARPLPITGVD 662
+G D + +L QL F+ F C R+DG ++RL + GV
Sbjct: 647 KAMG---DPAQMAQLCSQLPTQLFL--FDC--LRADGRKIPIELRLVLVWDDDQRFEGV- 698
Query: 663 CMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGYSEIEA 722
L + RDI+++ ++ L++AATVFE++ +LITD I N AFS ++GY+ E
Sbjct: 699 --LGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEV 756
Query: 723 LGQTPRLLASGQHDSAFYLAMWHQLTAEGHWQGEIYNKRKNGELYPSWLTISAVRNSDRE 782
L Q P +L + + QL G W+GE++ KR++G+ YP+W+ I+AV + + +
Sbjct: 757 LDQLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGD 816
Query: 783 ITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVL 842
+ +V F DIS K ++ ++ A++D LT LPNRTLF++RL L A+ ++
Sbjct: 817 LASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLM 876
Query: 843 FLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSD 902
FLDLDRFK INDSLGH GD +LK +A RL V D DTVAR+GGDEF +LL +P+
Sbjct: 877 FLDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQP--RPTR 934
Query: 903 ------ASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADAAMYR 956
A +A +L PF EFF +ASIGI+L PQDG+++S L++NAD AMY
Sbjct: 935 EMALNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYH 994
Query: 957 SKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVGAEAL 1016
+K +G+N + Y ++ A A ER+ LE +LR A+E+NE L +QP+ S + L GAEAL
Sbjct: 995 AKERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEAL 1054
Query: 1017 IRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHYQPFGPLSINLAG 1076
+RW HPT G VPP FI + EE G ++ +GDWVL +A RQ++AW + +S+N++
Sbjct: 1055 LRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISA 1114
Query: 1077 AQLRHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQLAIDD 1136
Q L RI +L+ L L+LE+TE+ +M + EAL +L LK LG+ +A+DD
Sbjct: 1115 RQFSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDD 1174
Query: 1137 FGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVEN 1196
FGTGYSSL+YLK+ P+D+LKID++F+ GLP+ DA IARAIIA+ S+ L +IAEGVE
Sbjct: 1175 FGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVET 1234
Query: 1197 QAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAF 1229
Q FL GC+++QGY+ P+P +F A F
Sbjct: 1235 HEQLEFLREHGCDEVQGYLFGRPMPAHQFEAQF 1267
Score = 75.9 bits (185), Expect = 2e-17
Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 28/285 (9%)
Query: 292 LSSEISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPLSD 351
+ +++ +I Q LR SE YR L ES+S + + D N +YVSP + +LGY +D
Sbjct: 561 VGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTD-NQLKLNYVSPSVQSVLGYQ-AD 618
Query: 352 WLRPGFWRSIL-HPEDALWAQAYCDSETAAGRDHS-------------LDYRVIRADGQ- 396
W+ W+SI+ +P + + + A D + + +RADG+
Sbjct: 619 WIFANGWQSIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRK 678
Query: 397 -PLWVRNIVSMIEHGHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARH 455
P+ +R ++ + + G+ DIS+ +R E LR++ A+VF+ +LI
Sbjct: 679 IPIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRMA----ATVFEHSTSAILITDP 734
Query: 456 SDGCLLEVNEAFEEQIGLPPDQVIGRTATDLDL-WGVEGSGPLLLERLHQGGIRNLEMSF 514
+ G +++ NEAF G +V+ + L + EG ++++LHQ G E+
Sbjct: 735 A-GYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWL 793
Query: 515 RRSNGQ---LFTGLTSAETFELDGTPALVVAVRDISQLKETQQQL 556
+R +G + G+T+ E D + V DIS+ K ++Q++
Sbjct: 794 KRRDGDHYPAWVGITAVLDDEGD-LASYVCFFTDISERKASEQRI 837
Score = 51.6 bits (122), Expect = 4e-10
Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 52/347 (14%)
Query: 294 SEISRRIALEQELRSSEYHYRGLVESLSAIAWEADANDFTYSYVSPHAEDLLGYPLSDWL 353
S+I+ R +E L E + +V ++ + D + + H LGY ++
Sbjct: 430 SDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDRTELA 489
Query: 354 RPG--FWRSILHPEDALWAQAYCDSETAAGRDHSL--DYRVIRADG--------QPLWVR 401
+ G FW +LHPEDA QA + D L R DG + + R
Sbjct: 490 QMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLHCQLRFRHRDGSWRCYDIREQVLTR 549
Query: 402 NIVSMIEHGHQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLL 461
N ++ + G+ D++ +LR SEQ++ + + D+ + + + L
Sbjct: 550 NAEGLVTR-----IIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDV-IFSTDNQLKLN 603
Query: 462 EVNEAFEEQIGLPPDQVIGR-----TATDLDLWGVEGSGPLLLERLHQGGIRNLEMSFRR 516
V+ + + +G D + A L G+ L+ER+ + +M+ +
Sbjct: 604 YVSPSVQSVLGYQADWIFANGWQSIVANPAQLTGIYS----LMERVSKAMGDPAQMA--Q 657
Query: 517 SNGQLFTGLTSAETFELDGT------------------PALVVAVRDISQLKETQQQLQT 558
QL T L + DG ++ RDISQ + ++ L+
Sbjct: 658 LCSQLPTQLFLFDCLRADGRKIPIELRLVLVWDDDQRFEGVLGVGRDISQQRRAEKDLRM 717
Query: 559 SEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFCRLTGYDLNPTIDQ 605
+ A F S +L++ + G +++ NE F R++GY ++ +DQ
Sbjct: 718 A----ATVFEHSTSAILITDPA-GYIVQANEAFSRVSGYAVSEVLDQ 759