Pairwise Alignments

Query, 601 a.a., putative Acyl-CoA dehydrogenase from Pseudomonas putida KT2440

Subject, 617 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Variovorax sp. SCN45

 Score =  311 bits (798), Expect = 4e-89
 Identities = 207/601 (34%), Positives = 307/601 (51%), Gaps = 47/601 (7%)

Query: 33  DATPDMVDAILEEGAKFCEQVLSPLNRVGDQEGCTWSESGVKTPTGFKEAYQQFVEGGWP 92
           D + +  DA+L+   +   +  +P NR  D +   +    V  P    +A++ FVE G  
Sbjct: 28  DHSRETFDAVLDICERIAREKYAPFNRTVDTQEPHFDGEKVILPQATHDAHKAFVESGMM 87

Query: 93  SLAHDVEHGGQGLPESLGLALSEMVGGSNWSWGMYPGLSHGAMNTISAHGTAEQQHTYLT 152
           S A D + GG  LP ++  A +     ++ S G    L+ G  N +  HGT  Q++ +  
Sbjct: 88  SAAQDYDIGGMQLPYTMQAAANSFFAMASVSIGSNM-LTSGNANLLMVHGTDMQKNVFAK 146

Query: 153 KLVSGEWTGTMCLTEPHCGTDLGMLRTKAEPQADG--------SYKVSGTKIFISAGEHD 204
              SG W GTMCL+EP  G+ L  + T+A P  +G         Y+++G K++ISAG+H+
Sbjct: 147 NEFSGRWAGTMCLSEPQAGSSLSDVATRAVPDGEGFQDDPLGPRYRLTGNKMWISAGDHE 206

Query: 205 MADNIVHIVLARLPDAPA----GTKGISLFIVPKFLPNAEGGV-GERNGVSCGSIEHKMG 259
           + +NIVHIVLA++PD       GT+GISLFIVPK + + +G + G+RN V+   + HK+G
Sbjct: 207 LTENIVHIVLAKIPDENGKLVPGTRGISLFIVPKRMVDTKGKLTGQRNDVALAGLNHKLG 266

Query: 260 IHGNATCVMNFD----------AATGYLIGPANKGLNCMFTFMNTARLGTALQGLAHAEV 309
             G    ++NF            A GYL+G   KGL+CMF  MN AR+G           
Sbjct: 267 WRGTTNTLLNFGEGKYPVDGKAGAVGYLVGEPGKGLHCMFHMMNEARIGVGTAATMLGMA 326

Query: 310 AFQGGLKYARERLQMRSLTGPKAP------DKAADP--IIVHPDVRRMLLTMKAFAEGNR 361
            +   L+YA+ R Q R +  P+A       D AA    II H DVRRMLL  KA+ EG  
Sbjct: 327 GYHASLEYAKTRPQGRLVKKPQAAGTAVAKDSAAPQVRIIEHADVRRMLLAQKAYCEGAL 386

Query: 362 AMVYFTAKQVDIVKYSQDEEERKKADALLAFLTPIAKAFMTEVGFEAANHGVQIYGGHGF 421
           A+  + A+ VD  K + D +    A  LL  LTPIAK++ +E   EA +  +Q++GG+G+
Sbjct: 387 ALELYCARLVDEQK-TGDAQAADDARLLLEVLTPIAKSWPSEWCLEANSLAIQVHGGYGY 445

Query: 422 IAEWGMEQNVRDSRISMLYEGTTGIQALDLLGRKVLMTQGEALKGFTKIVHKFCQAQEGN 481
             ++ +EQ  RD+R++M++EGT GIQA DLLGRKVLM +G  L+                
Sbjct: 446 TRDFPVEQYWRDNRLNMIHEGTHGIQAADLLGRKVLMEKGRGLQ-------LLAGRMTAT 498

Query: 482 EAVKEFVEPLAAINKEWGELTMKVGMAA-----MKDREEVGAASVDYLMYSGYACLAYFW 536
            A    V  LAA  K  G    ++G A        D  +  A +V Y+   G+  LA+ W
Sbjct: 499 IASAAKVPALAAHAKALGAALQRIGSATEAAWFTGDPADALANAVPYMQAFGHTVLAWIW 558

Query: 537 ADIARLAAEKLAAGTSEEAFYTAKLQTARFYFQRILPRTRTHVATMLSGANNLMAMDEEH 596
            D+AR A EK   G    A    K+    ++F   LP+    +  + +      A+ E+ 
Sbjct: 559 LDVARRALEK--DGEKARAVTAGKIGATDYFFHYELPKIGAWLNVVETRDPTCTALPEDA 616

Query: 597 F 597
           F
Sbjct: 617 F 617