Pairwise Alignments

Query, 295 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 300 a.a., Uncharacterized inner membrane protein RarD from Sphingobium sp. HT1-2

 Score =  228 bits (580), Expect = 2e-64
 Identities = 130/290 (44%), Positives = 173/290 (59%), Gaps = 7/290 (2%)

Query: 7   RRGYILGLSAYIIWGLFPLYFKAIQSVPAVEIIVHRVLWSALFGSLLLLVWKHPGWWREL 66
           R+G I  +  Y IWG+ PL+F+ +  V  +EI+  RV+WS +   +LL   K    +   
Sbjct: 9   RKGVIAAIGTYSIWGMLPLFFRLLHHVDPIEIVTQRVIWSVILILVLLAARKGLAAFVAA 68

Query: 67  RNNPRRLGILALSGALIAGNWLTYVWSVNNGRMLEASLGYYINPLINVLLGMLILGERLR 126
              PR +  LA S  +IA NWL YVW+VN+G ++  SLGY++NPL++V LG++IL ERLR
Sbjct: 69  LRTPRLVLPLAASAVMIAINWLVYVWAVNDGHVVACSLGYFLNPLVSVGLGVVILKERLR 128

Query: 127 RLQWLAVGMAAVGVAQQVWQVGSLPWVSLVLALSFGFYGLIRKQAPVAALPGLVVETWML 186
           R Q LA+ +AA+GVA       +  W+SL LA+SF  YGLIRK  PVA + GL VET +L
Sbjct: 129 RGQMLAIAIAAIGVAILAAAALTTLWISLALAISFALYGLIRKLTPVAPMTGLGVETLLL 188

Query: 187 VPLALG---WLLLHPTAMSAQGAFYTSSEALWLMAAGPVTLVPLVCFNAAARHLPYTTLG 243
           V  A+G   WL  H      Q    T      L+ AG VT VPLV F  AA+ LP  TLG
Sbjct: 189 VAPAIGYLIWLAGHGGISFGQDVPTTG----LLILAGGVTTVPLVLFATAAQRLPLATLG 244

Query: 244 FLQYLAPTLVLLQAVVLFDEHLSSSTLAAFMFIWAGLAIYSVDAWLNLRK 293
            LQYLAPTL  L  VVL  E LS   + +F  IW GL +++ D++   R+
Sbjct: 245 LLQYLAPTLQFLCGVVLLGETLSKGQMLSFGLIWLGLILFASDSYAAARR 294