Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 174 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

 Score = 79.7 bits (195), Expect = 2e-20
 Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 7/168 (4%)

Query: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTP-RE 59
           M +   P +DL+ A  R  R  L A L R +  R  AE+  Q+T++RL G        R+
Sbjct: 1   MIAKTDPSSDLMLAYMRQWRD-LRAHLCRRVGSRDLAEEALQETWLRLAGMGPAPVGVRD 59

Query: 60  PRAFLAAVAKGLMFDHFRR----AALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDR 115
             AFL  +A  +  D  RR    AA + +  A L  I +A  PSPE   L  ++L+ +  
Sbjct: 60  CHAFLLRIAGNIAIDLLRRERRHAARQISDEAVLRGIADAT-PSPEAYALHRDELRVLVH 118

Query: 116 LLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
            L +L  + RAA L SR DG+ HAEI  R+ VS S V +Y+ Q +R C
Sbjct: 119 ALAELEQRPRAALLLSRCDGLTHAEIGARMKVSDSMVAKYLVQALRHC 166