Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  115 bits (288), Expect = 4e-31
 Identities = 59/158 (37%), Positives = 95/158 (60%)

Query: 6   SPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLA 65
           S H   V  +Y  H  WL  WL+  +     A D++ DTFVR+LG        EPR +LA
Sbjct: 4   SSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRDYLA 63

Query: 66  AVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKAR 125
            +A+GL+ D +RR A+EQAY   LA  P+A   S E + +I+E L A+D+ L  L  +AR
Sbjct: 64  TIARGLVIDRYRRHAIEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGERAR 123

Query: 126 AAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
             F+ S+++G+ + +IA+ L VS++ V++++ + + +C
Sbjct: 124 RIFMLSQVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161