Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  290 bits (742), Expect = 9e-84
 Identities = 140/171 (81%), Positives = 160/171 (93%)

Query: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREP 60
           MSS Q+PH++LVGALYRDHRGWLLAWL+R++AC  RAEDLSQDTF+RLLGR++L  PREP
Sbjct: 1   MSSIQNPHSELVGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAPREP 60

Query: 61  RAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKL 120
           RAFL A+AKGL+FD+FRRAALEQAYL EL LIPE+E PSPE QHLILEDLKAIDRLLGKL
Sbjct: 61  RAFLMAIAKGLLFDYFRRAALEQAYLTELMLIPESEHPSPEEQHLILEDLKAIDRLLGKL 120

Query: 121 SSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEP 171
           SSKARAAFL++RLDG+GHAEIA+RLGVSV RVRQY+AQG+RQCY+ALYGEP
Sbjct: 121 SSKARAAFLYNRLDGIGHAEIAQRLGVSVPRVRQYLAQGIRQCYIALYGEP 171