Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 67.0 bits (162), Expect = 2e-16
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 18  DHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTP-REPRAFLAAVAKGLMFDHF 76
           D+R  L+    R   CR RAED+ QD + RL     + +  +   ++L  + + L  DH+
Sbjct: 20  DNRLILVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQIVRNLAIDHY 79

Query: 77  RRAALEQAY--LAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLD 134
           R+ ALE  Y    E  L       SPE  H+    L+ I   L +L  + R AF   RL 
Sbjct: 80  RKQALELKYSGTEEEGLNVVIHGASPETSHINFNTLENIADALTELPQRTRYAFEMYRLH 139

Query: 135 GMGHAEIAERLGVSVSRVRQYIAQGMRQC 163
           G+   +IA+ LGVS + V   I   +  C
Sbjct: 140 GVPQKDIAKELGVSPTLVNFMIRDALVHC 168