Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 81.3 bits (199), Expect = 8e-21
 Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 23  LLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPRE-PRAFLAAVAKGLMFDHFRRAAL 81
           L+ +L   +  RQ AED+  D +VR+L R   DTP E PRAFL   A  L+ D  RR AL
Sbjct: 9   LVCFLNAKLGNRQVAEDVVHDAYVRVLERSS-DTPIEQPRAFLYRTALNLVIDGHRRNAL 67

Query: 82  EQAYLAELALIPEA-EQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAE 140
            Q    ++    E     SP   H   + L+ ++R L +L    R +FL  +L+G+ H +
Sbjct: 68  RQVEPLDVLDAEERFASSSPHTHHDHGQRLELLERALAELPPACRDSFLLRKLEGLTHLQ 127

Query: 141 IAERLGVSVSRVRQYIAQGMRQCYVAL 167
           IAERL +S + V ++I   M+ C V +
Sbjct: 128 IAERLSISRAMVEKHIVNAMKHCRVRM 154