Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  129 bits (324), Expect = 3e-35
 Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 14  ALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGLMF 73
           A+Y +H GWL  WL++ + C Q A DL+ D F+R+L   +    +EPRAFLA  A  L+ 
Sbjct: 19  AMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRLLI 78

Query: 74  DHFRRAALEQAYLAELAL-IPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSR 132
           D  RR  +E+AY+  L +   +A  P P   H+ L+ L+ I  +L  L +KAR AFL SR
Sbjct: 79  DGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFLLSR 138

Query: 133 LDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALY 168
           LDG+ ++EIA RL VS S V+ YI+  +  CY +L+
Sbjct: 139 LDGLTYSEIATRLDVSASTVKNYISSALVHCYHSLH 174