Pairwise Alignments

Query, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

Subject, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 73.9 bits (180), Expect = 1e-18
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)

Query: 18  DHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGLMFDHFR 77
           +H   L+    R +  RQ+AEDL+ DTFVR+L  +  +   +PRA+L   A+ +  D +R
Sbjct: 13  EHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESKSSEV-EQPRAYLHQTARNIAVDAYR 71

Query: 78  RAALEQAYLAEL--ALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDG 135
           R    +A   E      P +  P   M  + L D  +I+R L +L    R  F+  +++G
Sbjct: 72  REDRREAITLEAFDQRSPNSGDPEHFMHAIQLAD--SIERALSELPLNCRKIFIWQKIEG 129

Query: 136 MGHAEIAERLGVSVSRVRQYIAQGMR 161
           +   EIAERLG+S + V +Y+ + +R
Sbjct: 130 LTQQEIAERLGLSKNMVEKYMIRTLR 155